Database Table rundb_experimentanalysissettings¶
Postgres database: iondb
Postgres table: rundb_experimentanalysissettings
Experiment analysis settings data model.
Lifecycle¶
A versioned set of analysis parameter values is created when the user modifies settings for a reanalysis run.
Referenced by¶
Schema¶
| Field | Type | Description |
|---|---|---|
| alignmentargs | String (up to 5000) | Alignment args |
| analysisargs | String (up to 5000) | Analysis args |
| barcodeKitName | String (up to 128) | barcodeKitName |
| barcodedSamples | Text | barcodedSamples |
| base_recalibration_mode | String (up to 64) | base recalibration mode |
| basecallerargs | String (up to 5000) | Basecaller args |
| beadfindargs | String (up to 5000) | Beadfind args |
| calibrateargs | String (up to 5000) | Calibration args, used for recalibration |
| date | Date (with time) | date |
| experiment | Experiment (ForeignKey) | the related rundb.Experiment row |
| hotSpotRegionBedFile | String (up to 1024) | hotSpotRegionBedFile |
| id | Integer | ID |
| isDuplicateReads | Boolean (Either True or False) | isDuplicateReads |
| isEditable | Boolean (Either True or False) | isEditable |
| isOneTimeOverride | Boolean (Either True or False) | isOneTimeOverride |
| libraryKey | String (up to 64) | libraryKey |
| libraryKitBarcode | String (up to 512) | libraryKitBarcode |
| libraryKitName | String (up to 512) | libraryKitName |
| mixedTypeRNA_hotSpotRegionBedFile | String (up to 1024) | mixedTypeRNA hotSpotRegionBedFile |
| mixedTypeRNA_reference | String (up to 512) | mixedTypeRNA reference |
| mixedTypeRNA_targetRegionBedFile | String (up to 1024) | mixedTypeRNA targetRegionBedFile |
| prebasecallerargs | String (up to 5000) | Pre Basecaller args, used for recalibration |
| prethumbnailbasecallerargs | String (up to 5000) | Thumbnail Pre Basecaller args, used for recalibration |
| realign | Boolean (Either True or False) | realign |
| reference | String (up to 512) | reference |
| selectedPlugins | Text | selectedPlugins |
| status | String (up to 512) | status |
| targetRegionBedFile | String (up to 1024) | targetRegionBedFile |
| tfKey | String (up to 64) | tfKey |
| threePrimeAdapter | String (up to 512) | 3’ adapter |
| thumbnailalignmentargs | String (up to 5000) | Thumbnail Alignment args |
| thumbnailanalysisargs | String (up to 5000) | Thumbnail Analysis args |
| thumbnailbasecallerargs | String (up to 5000) | Thumbnail Basecaller args |
| thumbnailbeadfindargs | String (up to 5000) | Thumbnail Beadfind args |
| thumbnailcalibrateargs | String (up to 5000) | Thumbnail Calibration args, used for recalibration |
Table of contents
Previous topic
Database Table rundb_experiment
Next topic
Database Table rundb_filemonitor