Database Table rundb_experimentanalysissettings
============================================================================

Postgres database: ``iondb``


Postgres table: ``rundb_experimentanalysissettings``


.. include:: ../manual_database_ref_docs/rundb_experimentanalysissettings.rst

Schema
-------

+--------------------------------------+----------------------------------+---------------------------------------------------------+
| Field                                | Type                             | Description                                             |
+======================================+==================================+=========================================================+
| alignmentargs                        | String (up to 5000)              | Alignment args                                          |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| analysisargs                         | String (up to 5000)              | Analysis args                                           |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| barcodeKitName                       | String (up to 128)               | barcodeKitName                                          |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| barcodedSamples                      | Text                             | barcodedSamples                                         |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| base\_recalibration\_mode            | String (up to 64)                | base recalibration mode                                 |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| basecallerargs                       | String (up to 5000)              | Basecaller args                                         |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| beadfindargs                         | String (up to 5000)              | Beadfind args                                           |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| calibrateargs                        | String (up to 5000)              | Calibration args, used for recalibration                |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| date                                 | Date (with time)                 | date                                                    |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| experiment                           | Experiment (ForeignKey)          | the related rundb.Experiment row                        |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| hotSpotRegionBedFile                 | String (up to 1024)              | hotSpotRegionBedFile                                    |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| id                                   | Integer                          | ID                                                      |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| isDuplicateReads                     | Boolean (Either True or False)   | isDuplicateReads                                        |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| isEditable                           | Boolean (Either True or False)   | isEditable                                              |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| isOneTimeOverride                    | Boolean (Either True or False)   | isOneTimeOverride                                       |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| libraryKey                           | String (up to 64)                | libraryKey                                              |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| libraryKitBarcode                    | String (up to 512)               | libraryKitBarcode                                       |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| libraryKitName                       | String (up to 512)               | libraryKitName                                          |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| mixedTypeRNA\_hotSpotRegionBedFile   | String (up to 1024)              | mixedTypeRNA hotSpotRegionBedFile                       |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| mixedTypeRNA\_reference              | String (up to 512)               | mixedTypeRNA reference                                  |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| mixedTypeRNA\_targetRegionBedFile    | String (up to 1024)              | mixedTypeRNA targetRegionBedFile                        |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| prebasecallerargs                    | String (up to 5000)              | Pre Basecaller args, used for recalibration             |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| prethumbnailbasecallerargs           | String (up to 5000)              | Thumbnail Pre Basecaller args, used for recalibration   |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| realign                              | Boolean (Either True or False)   | realign                                                 |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| reference                            | String (up to 512)               | reference                                               |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| selectedPlugins                      | Text                             | selectedPlugins                                         |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| status                               | String (up to 512)               | status                                                  |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| targetRegionBedFile                  | String (up to 1024)              | targetRegionBedFile                                     |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| tfKey                                | String (up to 64)                | tfKey                                                   |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| threePrimeAdapter                    | String (up to 512)               | 3' adapter                                              |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| thumbnailalignmentargs               | String (up to 5000)              | Thumbnail Alignment args                                |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| thumbnailanalysisargs                | String (up to 5000)              | Thumbnail Analysis args                                 |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| thumbnailbasecallerargs              | String (up to 5000)              | Thumbnail Basecaller args                               |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| thumbnailbeadfindargs                | String (up to 5000)              | Thumbnail Beadfind args                                 |
+--------------------------------------+----------------------------------+---------------------------------------------------------+
| thumbnailcalibrateargs               | String (up to 5000)              | Thumbnail Calibration args, used for recalibration      |
+--------------------------------------+----------------------------------+---------------------------------------------------------+