Composite Experiment Resource

Resource URL http://mytorrentserver/rundb/api/mesh/v1/compositeexperiment/
Schema URL http://mytorrentserver/rundb/api/mesh/v1/compositeexperiment/schema/

Resource Fields

field help text default nullable readonly blank unique type
_host Host this resource is located on. n/a false true false false string
chefReagentsSerialNum Unicode string data. Ex: “Hello World”   false false true false string
chefSolutionsSerialNum Unicode string data. Ex: “Hello World”   false false true false string
chefStartTime A date & time as a string. Ex: “2010-11-10T03:07:43” n/a true false false false datetime
chipType Unicode string data. Ex: “Hello World” n/a false false false false string
date A date & time as a string. Ex: “2010-11-10T03:07:43” n/a false false false false datetime
displayName Unicode string data. Ex: “Hello World”   false false false false string
expName Unicode string data. Ex: “Hello World” n/a false false false false string
flows Integer data. Ex: 2673 n/a false false false false integer
ftpStatus Unicode string data. Ex: “Hello World”   false false true false string
id Integer data. Ex: 2673   false false true true integer
notes Unicode string data. Ex: “Hello World” n/a true false false false string
pgmName Unicode string data. Ex: “Hello World” n/a false false false false string
plan A single related resource. Can be either a URI or set of nested resource data. n/a true false true false related
platform Unicode string data. Ex: “Hello World”   false false true false string
repResult A single related resource. Can be either a URI or set of nested resource data. n/a true false true false related
resource_uri Unicode string data. Ex: “Hello World” n/a false true false false string
resultDate A date & time as a string. Ex: “2010-11-10T03:07:43” true true false false false datetime
results Many related resources. Can be either a list of URIs or list of individually nested resource data. n/a false false false false related
runMode Unicode string data. Ex: “Hello World”   false false true false string
star Boolean data. Ex: True false false false true false boolean
status Unicode string data. Ex: “Hello World”   false false true false string
storage_options Unicode string data. Ex: “Hello World” A false false false false string

Example Response

{
    "meta": {
        "limit": 1,
        "next": "/rundb/api/mesh/v1/compositeexperiment/?offset=1&limit=1&format=json",
        "offset": 0,
        "previous": null,
        "total_count": 146
    },
    "objects": [
        {
            "_host": "hawk.itw",
            "applicationCategoryDisplayedName": "AmpliSeq DNA and Fusions",
            "barcodeId": "IonCode Barcodes 1-32",
            "barcodedSamples": {},
            "chefReagentsSerialNum": "",
            "chefSolutionsSerialNum": "",
            "chefStartTime": null,
            "chipDescription": "540",
            "chipInstrumentType": "S5",
            "chipType": "540",
            "date": "2019-10-03T22:24:50+00:00",
            "displayName": "user S16-754-R153458-540 DNA33-RNA18 OCAv3 AO-1002",
            "expName": "R_2019_10_03_15_23_03_user_S16-754-R153458-540_DNA33-RNA18_OCAv3_AO-1002",
            "flows": 400,
            "ftpStatus": "Complete",
            "id": 1800,
            "keep": false,
            "library": "hg19",
            "notes": "",
            "pgmName": "S16",
            "plan": {
                "id": 1808,
                "resource_uri": "",
                "runType": "AMPS_DNA_RNA",
                "sampleTubeLabel": null
            },
            "platform": "S5",
            "references": "hg19",
            "repResult": "/rundb/api/v1/compositeresult/1921/",
            "resource_uri": "/rundb/api/mesh/v1/compositeexperiment/1800/",
            "resultDate": "2019-10-04T02:55:43.000359+00:00",
            "results": [
                {
                    "analysis_metrics": {
                        "bead": 144205030,
                        "empty": 5365643,
                        "excluded": 13159848,
                        "id": 1785,
                        "ignored": 1554120,
                        "lib": 143117241,
                        "libFinal": 72109222,
                        "live": 144191568,
                        "pinned": 414495,
                        "resource_uri": "",
                        "total_wells": 164699136
                    },
                    "analysismetrics": {
                        "bead": 144205030,
                        "empty": 5365643,
                        "excluded": 13159848,
                        "id": 1785,
                        "ignored": 1554120,
                        "lib": 143117241,
                        "libFinal": 72109222,
                        "live": 144191568,
                        "pinned": 414495,
                        "resource_uri": "",
                        "total_wells": 164699136
                    },
                    "autoExempt": false,
                    "eas": {
                        "barcodeKitName": "IonCode Barcodes 1-32",
                        "chipType": "540",
                        "isPQ": false,
                        "reference": "hg19",
                        "references": "hg19",
                        "resource_uri": ""
                    },
                    "i18nstatus": {
                        "i18n": "Completed",
                        "state": "Completed"
                    },
                    "id": 1920,
                    "isShowAllMetrics": true,
                    "libmetrics": {
                        "aveKeyCounts": 100,
                        "i100Q20_reads": 32512585,
                        "id": 1632,
                        "q20_mean_alignment_length": 98,
                        "resource_uri": ""
                    },
                    "processedflows": 0,
                    "projects": [
                        {
                            "id": 179,
                            "modified": "2019-10-04T22:30:21.000322+00:00",
                            "name": "Valkyrie",
                            "resource_uri": ""
                        }
                    ],
                    "quality_metrics": {
                        "id": 1633,
                        "q0_bases": "8055445299",
                        "q0_mean_read_length": 111.714116247485,
                        "q0_reads": 72107676,
                        "q20_bases": "7144330852",
                        "q20_mean_read_length": 111,
                        "q20_reads": 72107676,
                        "resource_uri": ""
                    },
                    "qualitymetrics": {
                        "id": 1633,
                        "q0_bases": "8055445299",
                        "q0_mean_read_length": 111.714116247485,
                        "q0_reads": 72107676,
                        "q20_bases": "7144330852",
                        "q20_mean_read_length": 111,
                        "q20_reads": 72107676,
                        "resource_uri": ""
                    },
                    "reportLink": "/output/Home/Auto_user_S16-754-R153458-540_DNA33-RNA18_OCAv3_AO-1002_1800_1920/",
                    "reportStatus": "Nothing",
                    "representative": false,
                    "resource_uri": "/rundb/api/v1/compositeresult/1920/",
                    "resultsName": "Auto_user_S16-754-R153458-540_DNA33-RNA18_OCAv3_AO-1002_1800",
                    "status": "Completed",
                    "status_display": "Completed",
                    "timeStamp": "2019-10-04T02:55:43.000359+00:00"
                },
                {
                    "analysis_metrics": {
                        "bead": 882703,
                        "empty": 30634,
                        "excluded": 39760,
                        "id": 1784,
                        "ignored": 6104,
                        "lib": 876208,
                        "libFinal": 440446,
                        "live": 882647,
                        "pinned": 799,
                        "resource_uri": "",
                        "total_wells": 960000
                    },
                    "analysismetrics": {
                        "bead": 882703,
                        "empty": 30634,
                        "excluded": 39760,
                        "id": 1784,
                        "ignored": 6104,
                        "lib": 876208,
                        "libFinal": 440446,
                        "live": 882647,
                        "pinned": 799,
                        "resource_uri": "",
                        "total_wells": 960000
                    },
                    "autoExempt": false,
                    "eas": {
                        "barcodeKitName": "IonCode Barcodes 1-32",
                        "chipType": "540",
                        "isPQ": false,
                        "reference": "hg19",
                        "references": "hg19",
                        "resource_uri": ""
                    },
                    "i18nstatus": {
                        "i18n": "Completed",
                        "state": "Completed"
                    },
                    "id": 1921,
                    "isShowAllMetrics": true,
                    "libmetrics": {
                        "aveKeyCounts": 104,
                        "i100Q20_reads": 195606,
                        "id": 1631,
                        "q20_mean_alignment_length": 98,
                        "resource_uri": ""
                    },
                    "processedflows": 400,
                    "projects": [
                        {
                            "id": 179,
                            "modified": "2019-10-04T22:30:21.000322+00:00",
                            "name": "Valkyrie",
                            "resource_uri": ""
                        }
                    ],
                    "quality_metrics": {
                        "id": 1632,
                        "q0_bases": "49082942",
                        "q0_mean_read_length": 111.441965329731,
                        "q0_reads": 440435,
                        "q20_bases": "43452424",
                        "q20_mean_read_length": 111,
                        "q20_reads": 440435,
                        "resource_uri": ""
                    },
                    "qualitymetrics": {
                        "id": 1632,
                        "q0_bases": "49082942",
                        "q0_mean_read_length": 111.441965329731,
                        "q0_reads": 440435,
                        "q20_bases": "43452424",
                        "q20_mean_read_length": 111,
                        "q20_reads": 440435,
                        "resource_uri": ""
                    },
                    "reportLink": "/output/Home/Auto_user_S16-754-R153458-540_DNA33-RNA18_OCAv3_AO-1002_1800_tn_1921/",
                    "reportStatus": "Nothing",
                    "representative": false,
                    "resource_uri": "/rundb/api/v1/compositeresult/1921/",
                    "resultsName": "Auto_user_S16-754-R153458-540_DNA33-RNA18_OCAv3_AO-1002_1800_tn",
                    "status": "Completed",
                    "status_display": "Completed",
                    "timeStamp": "2019-10-04T00:39:45.000429+00:00"
                }
            ],
            "runMode": "single",
            "sample": "",
            "sampleDisplayedName": "",
            "sampleSetName": "",
            "star": false,
            "status": "run",
            "storage_options": "A"
        }
    ],
    "warnings": [
        "The Torrent Server(s) phuket.itw,hawk.itw have too many results to display. Only experiments newer than 2018-10-26 are displayed. Try searching or adding additional filters.",
        "Could not fetch runs from Torrent Server(s) tsautotest17.itw!"
    ]
}

Allowed list HTTP methods

  • GET
  • POST
  • PUT
  • DELETE
  • PATCH

Allowed detail HTTP methods

  • GET
  • POST
  • PUT
  • DELETE
  • PATCH