Compositeexperiment Resource

Resource URL: http://mytorrentserver/rundb/api/v1/compositeexperiment/

Schema URL: http://mytorrentserver/rundb/api/v1/compositeexperiment/schema/

Fields table

field	help text	default	nullable	readonly	blank	unique	type
ftpStatus	Unicode string data. Ex: “Hello World”		false	false	true	false	string
storage_options	Unicode string data. Ex: “Hello World”	A	false	false	false	false	string
star	Boolean data. Ex: True	false	false	false	true	false	boolean
chipType	Unicode string data. Ex: “Hello World”	n/a	false	false	false	false	string
notes	Unicode string data. Ex: “Hello World”	n/a	true	false	false	false	string
results	Many related resources. Can be either a list of URIs or list of individually nested resource data.	n/a	false	false	false	false	related
resultDate	A date & time as a string. Ex: “2010-11-10T03:07:43”	true	true	false	false	false	datetime
flows	Integer data. Ex: 2673	n/a	false	false	false	false	integer
repResult	A single related resource. Can be either a URI or set of nested resource data.	n/a	true	false	true	false	related
runMode	Unicode string data. Ex: “Hello World”		false	false	true	false	string
expName	Unicode string data. Ex: “Hello World”	n/a	false	false	false	false	string
pgmName	Unicode string data. Ex: “Hello World”	n/a	false	false	false	false	string
date	A date & time as a string. Ex: “2010-11-10T03:07:43”	n/a	false	false	false	false	datetime
resource_uri	Unicode string data. Ex: “Hello World”	n/a	false	true	false	false	string
id	Integer data. Ex: 2673		false	false	true	true	integer
plan	A single related resource. Can be either a URI or set of nested resource data.	n/a	true	false	true	false	related

Example request

Request URL: http://mytorrentserver/rundb/api/v1/compositeexperiment/?format=json&limit=1

Python example

import requests

ts_api_request = requests.get("http://mytorrentserver/rundb/api/v1/compositeexperiment/", params={"format": "json", "limit": 1})
ts_api_response = ts_api_request.json()

compositeexperiments = ts_api_response["objects"]

for compositeexperiment in compositeexperiments:
    print compositeexperiment

Torrent Server response

{
    "meta": {
        "previous": null,
        "total_count": 20366,
        "offset": 0,
        "limit": 1,
        "next": "/rundb/api/v1/compositeexperiment/?offset=1&limit=1&format=json"
    },
    "objects": [
        {
            "chipInstrumentType": "proton",
            "chipType": "P1.1.17",
            "results": [
                {
                    "status": "Completed",
                    "processedflows": 0,
                    "analysis_metrics": {
                        "ignored": 1364892,
                        "lib": 118063544,
                        "total_wells": 164699136,
                        "pinned": 463867,
                        "live": 118074386,
                        "excluded": 16095180,
                        "bead": 118525043,
                        "resource_uri": "",
                        "id": 41726,
                        "empty": 28250154,
                        "libFinal": 85604279
                    },
                    "timeStamp": "2014-06-28T07:11:58.000789+00:00",
                    "analysismetrics": {
                        "ignored": 1364892,
                        "lib": 118063544,
                        "total_wells": 164699136,
                        "pinned": 463867,
                        "live": 118074386,
                        "excluded": 16095180,
                        "bead": 118525043,
                        "resource_uri": "",
                        "id": 41726,
                        "empty": 28250154,
                        "libFinal": 85604279
                    },
                    "reportLink": "/output/Home/Auto_user_Z28-428--r65714-pou4_dbsa_23958_304393/",
                    "id": 304393,
                    "reportStatus": "Nothing",
                    "quality_metrics": {
                        "q0_mean_read_length": 178.362197969099,
                        "q0_reads": 85604279,
                        "q0_bases": "15268567358",
                        "q20_reads": 85604279,
                        "q20_bases": "13060288783",
                        "q20_mean_read_length": 178,
                        "id": 39683,
                        "resource_uri": ""
                    },
                    "resultsName": "Auto_user_Z28-428--r65714-pou4_dbsa_23958",
                    "projects": [
                        {
                            "resource_uri": "",
                            "id": 1385,
                            "name": "auto_chip",
                            "modified": "2014-06-27T21:21:43.000081+00:00"
                        }
                    ],
                    "qualitymetrics": {
                        "q0_mean_read_length": 178.362197969099,
                        "q0_reads": 85604279,
                        "q0_bases": "15268567358",
                        "q20_reads": 85604279,
                        "q20_bases": "13060288783",
                        "q20_mean_read_length": 178,
                        "id": 39683,
                        "resource_uri": ""
                    },
                    "eas": {
                        "resource_uri": "",
                        "reference": "hg19",
                        "barcodeKitName": "IonXpress"
                    },
                    "resource_uri": "/rundb/api/v1/compositeresult/304393/",
                    "libmetrics": {
                        "i100Q20_reads": 61016174,
                        "aveKeyCounts": 89.0,
                        "id": 41874,
                        "resource_uri": "",
                        "q20_mean_alignment_length": 159
                    },
                    "autoExempt": false,
                    "representative": false
                },
                {
                    "status": "Completed",
                    "processedflows": 520,
                    "analysis_metrics": {
                        "ignored": 9939,
                        "lib": 726685,
                        "total_wells": 960000,
                        "pinned": 44080,
                        "live": 726723,
                        "excluded": 0,
                        "bead": 738396,
                        "resource_uri": "",
                        "id": 41695,
                        "empty": 167585,
                        "libFinal": 517179
                    },
                    "timeStamp": "2014-06-28T00:18:42.000351+00:00",
                    "analysismetrics": {
                        "ignored": 9939,
                        "lib": 726685,
                        "total_wells": 960000,
                        "pinned": 44080,
                        "live": 726723,
                        "excluded": 0,
                        "bead": 738396,
                        "resource_uri": "",
                        "id": 41695,
                        "empty": 167585,
                        "libFinal": 517179
                    },
                    "reportLink": "/output/Home/Auto_user_Z28-428--r65714-pou4_dbsa_23958_tn_304394/",
                    "id": 304394,
                    "reportStatus": "Nothing",
                    "quality_metrics": {
                        "q0_mean_read_length": 176.041268110267,
                        "q0_reads": 517179,
                        "q0_bases": "91044847",
                        "q20_reads": 517179,
                        "q20_bases": "77321419",
                        "q20_mean_read_length": 176,
                        "id": 39658,
                        "resource_uri": ""
                    },
                    "resultsName": "Auto_user_Z28-428--r65714-pou4_dbsa_23958_tn",
                    "projects": [
                        {
                            "resource_uri": "",
                            "id": 1385,
                            "name": "auto_chip",
                            "modified": "2014-06-27T21:21:43.000081+00:00"
                        }
                    ],
                    "qualitymetrics": {
                        "q0_mean_read_length": 176.041268110267,
                        "q0_reads": 517179,
                        "q0_bases": "91044847",
                        "q20_reads": 517179,
                        "q20_bases": "77321419",
                        "q20_mean_read_length": 176,
                        "id": 39658,
                        "resource_uri": ""
                    },
                    "eas": {
                        "resource_uri": "",
                        "reference": "hg19",
                        "barcodeKitName": "IonXpress"
                    },
                    "resource_uri": "/rundb/api/v1/compositeresult/304394/",
                    "libmetrics": {
                        "i100Q20_reads": 358815,
                        "aveKeyCounts": 88.0,
                        "id": 41849,
                        "resource_uri": "",
                        "q20_mean_alignment_length": 155
                    },
                    "autoExempt": false,
                    "representative": false
                }
            ],
            "library": "hg19",
            "sample": "148541",
            "runMode": "single",
            "storage_options": "D",
            "repResult": "/rundb/api/v1/compositeresult/304394/",
            "id": 23958,
            "archived": false,
            "barcodeId": "IonXpress",
            "sampleSetName": "",
            "star": false,
            "resultDate": "2014-06-28T07:11:58.000789+00:00",
            "flows": 520,
            "plan": {
                "runType": "AMPS_EXOME",
                "id": 102195,
                "resource_uri": ""
            },
            "date": "2014-06-27T21:19:01+00:00",
            "ftpStatus": "Complete",
            "notes": "",
            "chipDescription": "PI",
            "pgmName": "Z28",
            "keep": false,
            "expName": "R_2014_06_27_17_13_22_user_Z28-428--r65714-pou4_dbsa",
            "resource_uri": "/rundb/api/v1/compositeexperiment/23958/"
        }
    ]
}

Allowed HTTP methods

• get
• post
• put
• delete
• patch