Compositeexperiment Resource¶
Resource URL: http://mytorrentserver/rundb/api/v1/compositeexperiment/
Schema URL: http://mytorrentserver/rundb/api/v1/compositeexperiment/schema/
Fields table¶
| field | help text | default | nullable | readonly | blank | unique | type |
|---|---|---|---|---|---|---|---|
| ftpStatus | Unicode string data. Ex: “Hello World” | false | false | true | false | string | |
| storage_options | Unicode string data. Ex: “Hello World” | A | false | false | false | false | string |
| star | Boolean data. Ex: True | false | false | false | true | false | boolean |
| chipType | Unicode string data. Ex: “Hello World” | n/a | false | false | false | false | string |
| notes | Unicode string data. Ex: “Hello World” | n/a | true | false | false | false | string |
| resultDate | A date & time as a string. Ex: “2010-11-10T03:07:43” | true | true | false | false | false | datetime |
| flows | Integer data. Ex: 2673 | n/a | false | false | false | false | integer |
| results | Many related resources. Can be either a list of URIs or list of individually nested resource data. | n/a | false | false | false | false | related |
| runMode | Unicode string data. Ex: “Hello World” | false | false | true | false | string | |
| expName | Unicode string data. Ex: “Hello World” | n/a | false | false | false | false | string |
| pgmName | Unicode string data. Ex: “Hello World” | n/a | false | false | false | false | string |
| date | A date & time as a string. Ex: “2010-11-10T03:07:43” | n/a | false | false | false | false | datetime |
| resource_uri | Unicode string data. Ex: “Hello World” | n/a | false | true | false | false | string |
| id | Integer data. Ex: 2673 | false | false | true | true | integer | |
| plan | A single related resource. Can be either a URI or set of nested resource data. | n/a | true | false | true | false | related |
Example request¶
Request URL: http://mytorrentserver/rundb/api/v1/compositeexperiment/?format=json&limit=1
Python example¶
import requests
ts_api_request = requests.get("http://mytorrentserver/rundb/api/v1/compositeexperiment/", params={"format": "json", "limit": 1})
ts_api_response = ts_api_request.json()
compositeexperiments = ts_api_response["objects"]
for compositeexperiment in compositeexperiments:
print compositeexperiment
Torrent Server response¶
{
"meta": {
"previous": null,
"total_count": 11335,
"offset": 0,
"limit": 1,
"next": "/rundb/api/v1/compositeexperiment/?offset=1&limit=1&format=json"
},
"objects": [
{
"chipInstrumentType": "pgm",
"chipType": "318C",
"results": [
{
"status": "Completed",
"processedflows": 520,
"analysis_metrics": {
"ignored": 655129,
"lib": 7752120,
"total_wells": 12862464,
"pinned": 88232,
"live": 7802979,
"excluded": 1575189,
"bead": 7808491,
"resource_uri": "",
"id": 12134,
"empty": 2735423,
"libFinal": 4521648
},
"timeStamp": "2014-01-28T22:05:05.000864+00:00",
"analysismetrics": {
"ignored": 655129,
"lib": 7752120,
"total_wells": 12862464,
"pinned": 88232,
"live": 7802979,
"excluded": 1575189,
"bead": 7808491,
"resource_uri": "",
"id": 12134,
"empty": 2735423,
"libFinal": 4521648
},
"reportLink": "/output17/IonEast/reanalyze_bpp_16215/",
"id": 16215,
"reportStatus": "Nothing",
"quality_metrics": {
"q0_mean_read_length": 247.0,
"q0_reads": 4521648,
"q0_bases": "1119261439",
"q20_reads": 4521648,
"q20_bases": "1034146239",
"q20_mean_read_length": 236,
"id": 10135,
"resource_uri": ""
},
"resultsName": "reanalyze_bpp",
"projects": [
{
"resource_uri": "",
"id": 162,
"name": "Chef_kit_AOO",
"modified": "2013-11-08T15:20:20.000568+00:00"
}
],
"qualitymetrics": {
"q0_mean_read_length": 247.0,
"q0_reads": 4521648,
"q0_bases": "1119261439",
"q20_reads": 4521648,
"q20_bases": "1034146239",
"q20_mean_read_length": 236,
"id": 10135,
"resource_uri": ""
},
"eas": {
"resource_uri": "",
"reference": "e_coli_dh10b",
"barcodeKitName": ""
},
"resource_uri": "/rundb/api/v1/compositeresult/16215/",
"libmetrics": {
"i100Q20_reads": 4244729,
"aveKeyCounts": 62.0,
"id": 12935,
"resource_uri": "",
"q20_mean_alignment_length": 239
},
"autoExempt": false,
"representative": false
},
{
"status": "Create Download Links",
"processedflows": 0,
"analysis_metrics": {
"ignored": 655129,
"lib": 7752120,
"total_wells": 12862464,
"pinned": 88232,
"live": 7802979,
"excluded": 1575189,
"bead": 7808491,
"resource_uri": "",
"id": 12133,
"empty": 2735423,
"libFinal": 0
},
"timeStamp": "2014-01-28T14:36:48.000875+00:00",
"analysismetrics": {
"ignored": 655129,
"lib": 7752120,
"total_wells": 12862464,
"pinned": 88232,
"live": 7802979,
"excluded": 1575189,
"bead": 7808491,
"resource_uri": "",
"id": 12133,
"empty": 2735423,
"libFinal": 0
},
"reportLink": "/output17/IonEast/reanalysis_bpp_16214/",
"id": 16214,
"reportStatus": "Nothing",
"quality_metrics": null,
"resultsName": "reanalysis_bpp",
"projects": [
{
"resource_uri": "",
"id": 162,
"name": "Chef_kit_AOO",
"modified": "2013-11-08T15:20:20.000568+00:00"
}
],
"qualitymetrics": null,
"eas": {
"resource_uri": "",
"reference": "e_coli_dh10b",
"barcodeKitName": ""
},
"resource_uri": "/rundb/api/v1/compositeresult/16214/",
"libmetrics": null,
"autoExempt": false,
"representative": false
},
{
"status": "Completed",
"processedflows": 520,
"analysis_metrics": {
"ignored": 655129,
"lib": 7752120,
"total_wells": 12862464,
"pinned": 88232,
"live": 7802979,
"excluded": 1575189,
"bead": 7808491,
"resource_uri": "",
"id": 12132,
"empty": 2735423,
"libFinal": 4521648
},
"timeStamp": "2014-01-21T20:02:18.000604+00:00",
"analysismetrics": {
"ignored": 655129,
"lib": 7752120,
"total_wells": 12862464,
"pinned": 88232,
"live": 7802979,
"excluded": 1575189,
"bead": 7808491,
"resource_uri": "",
"id": 12132,
"empty": 2735423,
"libFinal": 4521648
},
"reportLink": "/output17/IonEast/reanalysis_bpp_deleteme_16213/",
"id": 16213,
"reportStatus": "Nothing",
"quality_metrics": {
"q0_mean_read_length": 247.0,
"q0_reads": 4521648,
"q0_bases": "1119261439",
"q20_reads": 4521648,
"q20_bases": "1034146239",
"q20_mean_read_length": 236,
"id": 10134,
"resource_uri": ""
},
"resultsName": "reanalysis_bpp_deleteme",
"projects": [
{
"resource_uri": "",
"id": 162,
"name": "Chef_kit_AOO",
"modified": "2013-11-08T15:20:20.000568+00:00"
}
],
"qualitymetrics": {
"q0_mean_read_length": 247.0,
"q0_reads": 4521648,
"q0_bases": "1119261439",
"q20_reads": 4521648,
"q20_bases": "1034146239",
"q20_mean_read_length": 236,
"id": 10134,
"resource_uri": ""
},
"eas": {
"resource_uri": "",
"reference": "e_coli_dh10b",
"barcodeKitName": ""
},
"resource_uri": "/rundb/api/v1/compositeresult/16213/",
"libmetrics": {
"i100Q20_reads": 4244636,
"aveKeyCounts": 62.0,
"id": 12934,
"resource_uri": "",
"q20_mean_alignment_length": 239
},
"autoExempt": false,
"representative": false
},
{
"status": "Completed",
"processedflows": 520,
"analysis_metrics": {
"ignored": 655129,
"lib": 7752120,
"total_wells": 12862464,
"pinned": 88232,
"live": 7802979,
"excluded": 1575189,
"bead": 7808491,
"resource_uri": "",
"id": 12131,
"empty": 2735423,
"libFinal": 4521442
},
"timeStamp": "2013-12-31T20:38:54.000878+00:00",
"analysismetrics": {
"ignored": 655129,
"lib": 7752120,
"total_wells": 12862464,
"pinned": 88232,
"live": 7802979,
"excluded": 1575189,
"bead": 7808491,
"resource_uri": "",
"id": 12131,
"empty": 2735423,
"libFinal": 4521442
},
"reportLink": "/output17/IonEast/reanalysis_bpp_deleteme_16212/",
"id": 16212,
"reportStatus": "Nothing",
"quality_metrics": {
"q0_mean_read_length": 247.0,
"q0_reads": 4521442,
"q0_bases": "1118703994",
"q20_reads": 4521442,
"q20_bases": "1033639926",
"q20_mean_read_length": 236,
"id": 10133,
"resource_uri": ""
},
"resultsName": "reanalysis_bpp_deleteme",
"projects": [
{
"resource_uri": "",
"id": 162,
"name": "Chef_kit_AOO",
"modified": "2013-11-08T15:20:20.000568+00:00"
}
],
"qualitymetrics": {
"q0_mean_read_length": 247.0,
"q0_reads": 4521442,
"q0_bases": "1118703994",
"q20_reads": 4521442,
"q20_bases": "1033639926",
"q20_mean_read_length": 236,
"id": 10133,
"resource_uri": ""
},
"eas": {
"resource_uri": "",
"reference": "e_coli_dh10b",
"barcodeKitName": ""
},
"resource_uri": "/rundb/api/v1/compositeresult/16212/",
"libmetrics": {
"i100Q20_reads": 4243892,
"aveKeyCounts": 62.0,
"id": 12933,
"resource_uri": "",
"q20_mean_alignment_length": 239
},
"autoExempt": false,
"representative": false
},
{
"status": "Completed",
"processedflows": 520,
"analysis_metrics": {
"ignored": 675500,
"lib": 7825432,
"total_wells": 12862464,
"pinned": 148930,
"live": 7876394,
"excluded": 1559456,
"bead": 7883235,
"resource_uri": "",
"id": 12130,
"empty": 2595343,
"libFinal": 4445264
},
"timeStamp": "2013-12-26T18:37:39.000738+00:00",
"analysismetrics": {
"ignored": 675500,
"lib": 7825432,
"total_wells": 12862464,
"pinned": 148930,
"live": 7876394,
"excluded": 1559456,
"bead": 7883235,
"resource_uri": "",
"id": 12130,
"empty": 2595343,
"libFinal": 4445264
},
"reportLink": "/output17/IonEast/reanalysis_bpp_16211/",
"id": 16211,
"reportStatus": "Nothing",
"quality_metrics": {
"q0_mean_read_length": 248.0,
"q0_reads": 4445264,
"q0_bases": "1103257610",
"q20_reads": 4445264,
"q20_bases": "1020939246",
"q20_mean_read_length": 238,
"id": 10132,
"resource_uri": ""
},
"resultsName": "reanalysis_bpp",
"projects": [
{
"resource_uri": "",
"id": 162,
"name": "Chef_kit_AOO",
"modified": "2013-11-08T15:20:20.000568+00:00"
}
],
"qualitymetrics": {
"q0_mean_read_length": 248.0,
"q0_reads": 4445264,
"q0_bases": "1103257610",
"q20_reads": 4445264,
"q20_bases": "1020939246",
"q20_mean_read_length": 238,
"id": 10132,
"resource_uri": ""
},
"eas": {
"resource_uri": "",
"reference": "e_coli_dh10b",
"barcodeKitName": ""
},
"resource_uri": "/rundb/api/v1/compositeresult/16211/",
"libmetrics": {
"i100Q20_reads": 4176098,
"aveKeyCounts": 61.0,
"id": 12932,
"resource_uri": "",
"q20_mean_alignment_length": 240
},
"autoExempt": false,
"representative": false
},
{
"status": "Completed",
"processedflows": 520,
"analysis_metrics": {
"ignored": 675500,
"lib": 7825432,
"total_wells": 12862464,
"pinned": 148930,
"live": 7876394,
"excluded": 1559456,
"bead": 7883235,
"resource_uri": "",
"id": 12096,
"empty": 2595343,
"libFinal": 4445247
},
"timeStamp": "2013-11-12T22:47:52.000328+00:00",
"analysismetrics": {
"ignored": 675500,
"lib": 7825432,
"total_wells": 12862464,
"pinned": 148930,
"live": 7876394,
"excluded": 1559456,
"bead": 7883235,
"resource_uri": "",
"id": 12096,
"empty": 2595343,
"libFinal": 4445247
},
"reportLink": "/output17/IonEast/Auto_user_ZIR-84--R181550-chef_Pi10_s1_kit_lot-mlm_12451_16176/",
"id": 16176,
"reportStatus": "Nothing",
"quality_metrics": {
"q0_mean_read_length": 248.0,
"q0_reads": 4445247,
"q0_bases": "1103120511",
"q20_reads": 4445247,
"q20_bases": "1020893630",
"q20_mean_read_length": 238,
"id": 10104,
"resource_uri": ""
},
"resultsName": "Auto_user_ZIR-84--R181550-chef_Pi10_s1_kit_lot-mlm_12451",
"projects": [
{
"resource_uri": "",
"id": 162,
"name": "Chef_kit_AOO",
"modified": "2013-11-08T15:20:20.000568+00:00"
}
],
"qualitymetrics": {
"q0_mean_read_length": 248.0,
"q0_reads": 4445247,
"q0_bases": "1103120511",
"q20_reads": 4445247,
"q20_bases": "1020893630",
"q20_mean_read_length": 238,
"id": 10104,
"resource_uri": ""
},
"eas": {
"resource_uri": "",
"reference": "e_coli_dh10b",
"barcodeKitName": ""
},
"resource_uri": "/rundb/api/v1/compositeresult/16176/",
"libmetrics": {
"i100Q20_reads": 4176859,
"aveKeyCounts": 61.0,
"id": 12899,
"resource_uri": "",
"q20_mean_alignment_length": 240
},
"autoExempt": false,
"representative": false
}
],
"library": "e_coli_dh10b",
"sample": "E134809-build_2-L2899",
"runMode": "",
"storage_options": "D",
"id": 12451,
"archived": false,
"barcodeId": "",
"sampleSetName": "",
"star": false,
"resultDate": "2014-01-28T22:05:05.000864+00:00",
"flows": 520,
"plan": {
"runType": "WGNM",
"id": 44360,
"resource_uri": ""
},
"date": "2013-11-12T16:47:58+00:00",
"ftpStatus": "Complete",
"notes": "1T build 2 Lib2899 255bp lr3_lot1434687 Pi10 s1 chef kit reagent lot 2",
"chipDescription": "318",
"pgmName": "Zirm",
"keep": false,
"expName": "R_2013_11_12_11_47_58_user_ZIR-84--R181550-chef_Pi10_s1_kit_lot-mlm",
"resource_uri": "/rundb/api/v1/compositeexperiment/12451/"
}
]
}
Allowed HTTP methods¶
- get
- post
- put
- delete
- patch
