Compositeexperiment Resource ========================================================================== Resource URL: ``http://mytorrentserver/rundb/api/v1/compositeexperiment/`` Schema URL: ``http://mytorrentserver/rundb/api/v1/compositeexperiment/schema/`` .. include:: ../manual_api_ref_docs/compositeexperiment.rst Fields table ------------ =================== ================================================================================================== ======= ======== ======== ===== ====== ======== field help text default nullable readonly blank unique type =================== ================================================================================================== ======= ======== ======== ===== ====== ======== **ftpStatus** Unicode string data. Ex: "Hello World" false false true false string ------------------- -------------------------------------------------------------------------------------------------- ------- -------- -------- ----- ------ -------- **storage_options** Unicode string data. Ex: "Hello World" A false false false false string ------------------- -------------------------------------------------------------------------------------------------- ------- -------- -------- ----- ------ -------- **star** Boolean data. Ex: True false false false true false boolean ------------------- -------------------------------------------------------------------------------------------------- ------- -------- -------- ----- ------ -------- **chipType** Unicode string data. Ex: "Hello World" n/a false false false false string ------------------- -------------------------------------------------------------------------------------------------- ------- -------- -------- ----- ------ -------- **notes** Unicode string data. Ex: "Hello World" n/a true false false false string ------------------- -------------------------------------------------------------------------------------------------- ------- -------- -------- ----- ------ -------- **resultDate** A date & time as a string. Ex: "2010-11-10T03:07:43" true true false false false datetime ------------------- -------------------------------------------------------------------------------------------------- ------- -------- -------- ----- ------ -------- **flows** Integer data. Ex: 2673 n/a false false false false integer ------------------- -------------------------------------------------------------------------------------------------- ------- -------- -------- ----- ------ -------- **results** Many related resources. Can be either a list of URIs or list of individually nested resource data. n/a false false false false related ------------------- -------------------------------------------------------------------------------------------------- ------- -------- -------- ----- ------ -------- **runMode** Unicode string data. Ex: "Hello World" false false true false string ------------------- -------------------------------------------------------------------------------------------------- ------- -------- -------- ----- ------ -------- **expName** Unicode string data. Ex: "Hello World" n/a false false false false string ------------------- -------------------------------------------------------------------------------------------------- ------- -------- -------- ----- ------ -------- **pgmName** Unicode string data. Ex: "Hello World" n/a false false false false string ------------------- -------------------------------------------------------------------------------------------------- ------- -------- -------- ----- ------ -------- **date** A date & time as a string. Ex: "2010-11-10T03:07:43" n/a false false false false datetime ------------------- -------------------------------------------------------------------------------------------------- ------- -------- -------- ----- ------ -------- **resource_uri** Unicode string data. Ex: "Hello World" n/a false true false false string ------------------- -------------------------------------------------------------------------------------------------- ------- -------- -------- ----- ------ -------- **id** Integer data. Ex: 2673 false false true true integer ------------------- -------------------------------------------------------------------------------------------------- ------- -------- -------- ----- ------ -------- **plan** A single related resource. Can be either a URI or set of nested resource data. n/a true false true false related =================== ================================================================================================== ======= ======== ======== ===== ====== ======== Example request --------------- Request URL: ``http://mytorrentserver/rundb/api/v1/compositeexperiment/?format=json&limit=1`` Python example ^^^^^^^^^^^^^^ .. code-block:: python import requests ts_api_request = requests.get("http://mytorrentserver/rundb/api/v1/compositeexperiment/", params={"format": "json", "limit": 1}) ts_api_response = ts_api_request.json() compositeexperiments = ts_api_response["objects"] for compositeexperiment in compositeexperiments: print compositeexperiment Torrent Server response ^^^^^^^^^^^^^^^^^^^^^^^ .. code-block:: javascript { "meta": { "previous": null, "total_count": 11335, "offset": 0, "limit": 1, "next": "/rundb/api/v1/compositeexperiment/?offset=1&limit=1&format=json" }, "objects": [ { "chipInstrumentType": "pgm", "chipType": "318C", "results": [ { "status": "Completed", "processedflows": 520, "analysis_metrics": { "ignored": 655129, "lib": 7752120, "total_wells": 12862464, "pinned": 88232, "live": 7802979, "excluded": 1575189, "bead": 7808491, "resource_uri": "", "id": 12134, "empty": 2735423, "libFinal": 4521648 }, "timeStamp": "2014-01-28T22:05:05.000864+00:00", "analysismetrics": { "ignored": 655129, "lib": 7752120, "total_wells": 12862464, "pinned": 88232, "live": 7802979, "excluded": 1575189, "bead": 7808491, "resource_uri": "", "id": 12134, "empty": 2735423, "libFinal": 4521648 }, "reportLink": "/output17/IonEast/reanalyze_bpp_16215/", "id": 16215, "reportStatus": "Nothing", "quality_metrics": { "q0_mean_read_length": 247.0, "q0_reads": 4521648, "q0_bases": "1119261439", "q20_reads": 4521648, "q20_bases": "1034146239", "q20_mean_read_length": 236, "id": 10135, "resource_uri": "" }, "resultsName": "reanalyze_bpp", "projects": [ { "resource_uri": "", "id": 162, "name": "Chef_kit_AOO", "modified": "2013-11-08T15:20:20.000568+00:00" } ], "qualitymetrics": { "q0_mean_read_length": 247.0, "q0_reads": 4521648, "q0_bases": "1119261439", "q20_reads": 4521648, "q20_bases": "1034146239", "q20_mean_read_length": 236, "id": 10135, "resource_uri": "" }, "eas": { "resource_uri": "", "reference": "e_coli_dh10b", "barcodeKitName": "" }, "resource_uri": "/rundb/api/v1/compositeresult/16215/", "libmetrics": { "i100Q20_reads": 4244729, "aveKeyCounts": 62.0, "id": 12935, "resource_uri": "", "q20_mean_alignment_length": 239 }, "autoExempt": false, "representative": false }, { "status": "Create Download Links", "processedflows": 0, "analysis_metrics": { "ignored": 655129, "lib": 7752120, "total_wells": 12862464, "pinned": 88232, "live": 7802979, "excluded": 1575189, "bead": 7808491, "resource_uri": "", "id": 12133, "empty": 2735423, "libFinal": 0 }, "timeStamp": "2014-01-28T14:36:48.000875+00:00", "analysismetrics": { "ignored": 655129, "lib": 7752120, "total_wells": 12862464, "pinned": 88232, "live": 7802979, "excluded": 1575189, "bead": 7808491, "resource_uri": "", "id": 12133, "empty": 2735423, "libFinal": 0 }, "reportLink": "/output17/IonEast/reanalysis_bpp_16214/", "id": 16214, "reportStatus": "Nothing", "quality_metrics": null, "resultsName": "reanalysis_bpp", "projects": [ { "resource_uri": "", "id": 162, "name": "Chef_kit_AOO", "modified": "2013-11-08T15:20:20.000568+00:00" } ], "qualitymetrics": null, "eas": { "resource_uri": "", "reference": "e_coli_dh10b", "barcodeKitName": "" }, "resource_uri": "/rundb/api/v1/compositeresult/16214/", "libmetrics": null, "autoExempt": false, "representative": false }, { "status": "Completed", "processedflows": 520, "analysis_metrics": { "ignored": 655129, "lib": 7752120, "total_wells": 12862464, "pinned": 88232, "live": 7802979, "excluded": 1575189, "bead": 7808491, "resource_uri": "", "id": 12132, "empty": 2735423, "libFinal": 4521648 }, "timeStamp": "2014-01-21T20:02:18.000604+00:00", "analysismetrics": { "ignored": 655129, "lib": 7752120, "total_wells": 12862464, "pinned": 88232, "live": 7802979, "excluded": 1575189, "bead": 7808491, "resource_uri": "", "id": 12132, "empty": 2735423, "libFinal": 4521648 }, "reportLink": "/output17/IonEast/reanalysis_bpp_deleteme_16213/", "id": 16213, "reportStatus": "Nothing", "quality_metrics": { "q0_mean_read_length": 247.0, "q0_reads": 4521648, "q0_bases": "1119261439", "q20_reads": 4521648, "q20_bases": "1034146239", "q20_mean_read_length": 236, "id": 10134, "resource_uri": "" }, "resultsName": "reanalysis_bpp_deleteme", "projects": [ { "resource_uri": "", "id": 162, "name": "Chef_kit_AOO", "modified": "2013-11-08T15:20:20.000568+00:00" } ], "qualitymetrics": { "q0_mean_read_length": 247.0, "q0_reads": 4521648, "q0_bases": "1119261439", "q20_reads": 4521648, "q20_bases": "1034146239", "q20_mean_read_length": 236, "id": 10134, "resource_uri": "" }, "eas": { "resource_uri": "", "reference": "e_coli_dh10b", "barcodeKitName": "" }, "resource_uri": "/rundb/api/v1/compositeresult/16213/", "libmetrics": { "i100Q20_reads": 4244636, "aveKeyCounts": 62.0, "id": 12934, "resource_uri": "", "q20_mean_alignment_length": 239 }, "autoExempt": false, "representative": false }, { "status": "Completed", "processedflows": 520, "analysis_metrics": { "ignored": 655129, "lib": 7752120, "total_wells": 12862464, "pinned": 88232, "live": 7802979, "excluded": 1575189, "bead": 7808491, "resource_uri": "", "id": 12131, "empty": 2735423, "libFinal": 4521442 }, "timeStamp": "2013-12-31T20:38:54.000878+00:00", "analysismetrics": { "ignored": 655129, "lib": 7752120, "total_wells": 12862464, "pinned": 88232, "live": 7802979, "excluded": 1575189, "bead": 7808491, "resource_uri": "", "id": 12131, "empty": 2735423, "libFinal": 4521442 }, "reportLink": "/output17/IonEast/reanalysis_bpp_deleteme_16212/", "id": 16212, "reportStatus": "Nothing", "quality_metrics": { "q0_mean_read_length": 247.0, "q0_reads": 4521442, "q0_bases": "1118703994", "q20_reads": 4521442, "q20_bases": "1033639926", "q20_mean_read_length": 236, "id": 10133, "resource_uri": "" }, "resultsName": "reanalysis_bpp_deleteme", "projects": [ { "resource_uri": "", "id": 162, "name": "Chef_kit_AOO", "modified": "2013-11-08T15:20:20.000568+00:00" } ], "qualitymetrics": { "q0_mean_read_length": 247.0, "q0_reads": 4521442, "q0_bases": "1118703994", "q20_reads": 4521442, "q20_bases": "1033639926", "q20_mean_read_length": 236, "id": 10133, "resource_uri": "" }, "eas": { "resource_uri": "", "reference": "e_coli_dh10b", "barcodeKitName": "" }, "resource_uri": "/rundb/api/v1/compositeresult/16212/", "libmetrics": { "i100Q20_reads": 4243892, "aveKeyCounts": 62.0, "id": 12933, "resource_uri": "", "q20_mean_alignment_length": 239 }, "autoExempt": false, "representative": false }, { "status": "Completed", "processedflows": 520, "analysis_metrics": { "ignored": 675500, "lib": 7825432, "total_wells": 12862464, "pinned": 148930, "live": 7876394, "excluded": 1559456, "bead": 7883235, "resource_uri": "", "id": 12130, "empty": 2595343, "libFinal": 4445264 }, "timeStamp": "2013-12-26T18:37:39.000738+00:00", "analysismetrics": { "ignored": 675500, "lib": 7825432, "total_wells": 12862464, "pinned": 148930, "live": 7876394, "excluded": 1559456, "bead": 7883235, "resource_uri": "", "id": 12130, "empty": 2595343, "libFinal": 4445264 }, "reportLink": "/output17/IonEast/reanalysis_bpp_16211/", "id": 16211, "reportStatus": "Nothing", "quality_metrics": { "q0_mean_read_length": 248.0, "q0_reads": 4445264, "q0_bases": "1103257610", "q20_reads": 4445264, "q20_bases": "1020939246", "q20_mean_read_length": 238, "id": 10132, "resource_uri": "" }, "resultsName": "reanalysis_bpp", "projects": [ { "resource_uri": "", "id": 162, "name": "Chef_kit_AOO", "modified": "2013-11-08T15:20:20.000568+00:00" } ], "qualitymetrics": { "q0_mean_read_length": 248.0, "q0_reads": 4445264, "q0_bases": "1103257610", "q20_reads": 4445264, "q20_bases": "1020939246", "q20_mean_read_length": 238, "id": 10132, "resource_uri": "" }, "eas": { "resource_uri": "", "reference": "e_coli_dh10b", "barcodeKitName": "" }, "resource_uri": "/rundb/api/v1/compositeresult/16211/", "libmetrics": { "i100Q20_reads": 4176098, "aveKeyCounts": 61.0, "id": 12932, "resource_uri": "", "q20_mean_alignment_length": 240 }, "autoExempt": false, "representative": false }, { "status": "Completed", "processedflows": 520, "analysis_metrics": { "ignored": 675500, "lib": 7825432, "total_wells": 12862464, "pinned": 148930, "live": 7876394, "excluded": 1559456, "bead": 7883235, "resource_uri": "", "id": 12096, "empty": 2595343, "libFinal": 4445247 }, "timeStamp": "2013-11-12T22:47:52.000328+00:00", "analysismetrics": { "ignored": 675500, "lib": 7825432, "total_wells": 12862464, "pinned": 148930, "live": 7876394, "excluded": 1559456, "bead": 7883235, "resource_uri": "", "id": 12096, "empty": 2595343, "libFinal": 4445247 }, "reportLink": "/output17/IonEast/Auto_user_ZIR-84--R181550-chef_Pi10_s1_kit_lot-mlm_12451_16176/", "id": 16176, "reportStatus": "Nothing", "quality_metrics": { "q0_mean_read_length": 248.0, "q0_reads": 4445247, "q0_bases": "1103120511", "q20_reads": 4445247, "q20_bases": "1020893630", "q20_mean_read_length": 238, "id": 10104, "resource_uri": "" }, "resultsName": "Auto_user_ZIR-84--R181550-chef_Pi10_s1_kit_lot-mlm_12451", "projects": [ { "resource_uri": "", "id": 162, "name": "Chef_kit_AOO", "modified": "2013-11-08T15:20:20.000568+00:00" } ], "qualitymetrics": { "q0_mean_read_length": 248.0, "q0_reads": 4445247, "q0_bases": "1103120511", "q20_reads": 4445247, "q20_bases": "1020893630", "q20_mean_read_length": 238, "id": 10104, "resource_uri": "" }, "eas": { "resource_uri": "", "reference": "e_coli_dh10b", "barcodeKitName": "" }, "resource_uri": "/rundb/api/v1/compositeresult/16176/", "libmetrics": { "i100Q20_reads": 4176859, "aveKeyCounts": 61.0, "id": 12899, "resource_uri": "", "q20_mean_alignment_length": 240 }, "autoExempt": false, "representative": false } ], "library": "e_coli_dh10b", "sample": "E134809-build_2-L2899", "runMode": "", "storage_options": "D", "id": 12451, "archived": false, "barcodeId": "", "sampleSetName": "", "star": false, "resultDate": "2014-01-28T22:05:05.000864+00:00", "flows": 520, "plan": { "runType": "WGNM", "id": 44360, "resource_uri": "" }, "date": "2013-11-12T16:47:58+00:00", "ftpStatus": "Complete", "notes": "1T build 2 Lib2899 255bp lr3_lot1434687 Pi10 s1 chef kit reagent lot 2", "chipDescription": "318", "pgmName": "Zirm", "keep": false, "expName": "R_2013_11_12_11_47_58_user_ZIR-84--R181550-chef_Pi10_s1_kit_lot-mlm", "resource_uri": "/rundb/api/v1/compositeexperiment/12451/" } ] } Allowed HTTP methods -------------------- - get - post - put - delete - patch