Analysisargs Resource

Resource URL: http://mytorrentserver/rundb/api/v1/analysisargs/

Schema URL: http://mytorrentserver/rundb/api/v1/analysisargs/schema/

Fields table

field	help text	default	nullable	readonly	blank	unique	type
templateKitName	Unicode string data. Ex: “Hello World”		false	false	true	false	string
prebasecallerargs	Unicode string data. Ex: “Hello World”		false	false	true	false	string
libraryKitName	Unicode string data. Ex: “Hello World”		false	false	true	false	string
name	Unicode string data. Ex: “Hello World”	n/a	false	false	false	true	string
chipType	Unicode string data. Ex: “Hello World”		false	false	false	false	string
alignmentargs	Unicode string data. Ex: “Hello World”		false	false	true	false	string
thumbnailbasecallerargs	Unicode string data. Ex: “Hello World”		false	false	true	false	string
sequenceKitName	Unicode string data. Ex: “Hello World”		false	false	true	false	string
analysisargs	Unicode string data. Ex: “Hello World”		false	false	true	false	string
basecallerargs	Unicode string data. Ex: “Hello World”		false	false	true	false	string
thumbnailanalysisargs	Unicode string data. Ex: “Hello World”		false	false	true	false	string
chip_default	Boolean data. Ex: True	false	false	false	true	false	boolean
thumbnailalignmentargs	Unicode string data. Ex: “Hello World”		false	false	true	false	string
samplePrepKitName	Unicode string data. Ex: “Hello World”		false	false	true	false	string
active	Boolean data. Ex: True	true	false	false	true	false	boolean
prethumbnailbasecallerargs	Unicode string data. Ex: “Hello World”		false	false	true	false	string
beadfindargs	Unicode string data. Ex: “Hello World”		false	false	true	false	string
thumbnailbeadfindargs	Unicode string data. Ex: “Hello World”		false	false	true	false	string
id	Integer data. Ex: 2673		false	false	true	true	integer
resource_uri	Unicode string data. Ex: “Hello World”	n/a	false	true	false	false	string

Example request

Request URL: http://mytorrentserver/rundb/api/v1/analysisargs/?format=json&limit=1

Python example

import requests

ts_api_request = requests.get("http://mytorrentserver/rundb/api/v1/analysisargs/", params={"format": "json", "limit": 1})
ts_api_response = ts_api_request.json()

analysisargss = ts_api_response["objects"]

for analysisargs in analysisargss:
    print analysisargs

Torrent Server response

{
    "meta": {
        "previous": null,
        "total_count": 19,
        "offset": 0,
        "limit": 1,
        "next": "/rundb/api/v1/analysisargs/?offset=1&limit=1&format=json"
    },
    "objects": [
        {
            "templateKitName": "",
            "prebasecallerargs": "BaseCaller --keypass-filter on --phasing-residual-filter=2.0 --trim-qual-cutoff 15 --trim-qual-window-size 30 --trim-adapter-cutoff 16 --num-unfiltered 1000 --calibration-training=100000 --flow-signals-type scaled-residual --max-phasing-levels 2",
            "libraryKitName": "",
            "name": "AmpliseqExome_V3",
            "chipType": "P1.1.17",
            "alignmentargs": "stage1 map4",
            "thumbnailbasecallerargs": "BaseCaller --keypass-filter on --phasing-residual-filter=2.0 --trim-qual-cutoff 15 --trim-qual-window-size 30 --trim-adapter-cutoff 16 --num-unfiltered 100000",
            "sequenceKitName": "ProtonI200Kit-v3",
            "analysisargs": "Analysis --from-beadfind --clonal-filter-bkgmodel on --region-size=216x224 --bkg-bfmask-update off --gpuWorkLoad 1 --total-timeout 600 --gopt /opt/ion/config/gopt_p1.1.17_ampliseq_exome.param.json",
            "basecallerargs": "BaseCaller --keypass-filter on --phasing-residual-filter=2.0 --trim-qual-cutoff 15 --trim-qual-window-size 30 --trim-adapter-cutoff 16 --num-unfiltered 1000",
            "thumbnailanalysisargs": "Analysis --from-beadfind --clonal-filter-bkgmodel on --region-size=100x100 --bkg-bfmask-update off --gpuWorkLoad 1 --bkg-debug-param 1 --beadfind-thumbnail 1 --gopt /opt/ion/config/gopt_p1.1.17_ampliseq_exome.param.json",
            "chip_default": false,
            "thumbnailalignmentargs": "stage1 map4",
            "samplePrepKitName": "Ion AmpliSeq Exome Kit",
            "active": true,
            "prethumbnailbasecallerargs": "BaseCaller --keypass-filter on --phasing-residual-filter=2.0 --trim-qual-cutoff 15 --trim-qual-window-size 30 --trim-adapter-cutoff 16 --num-unfiltered 100000 --calibration-training=100000 --flow-signals-type scaled-residual",
            "beadfindargs": "justBeadFind --beadfind-minlivesnr 3 --region-size=216x224 --total-timeout 600",
            "thumbnailbeadfindargs": "justBeadFind --beadfind-minlivesnr 3 --region-size=100x100 --beadfind-thumbnail 1",
            "id": 18,
            "resource_uri": "/rundb/api/v1/analysisargs/18/"
        }
    ]
}

Allowed HTTP methods

• get
• post
• put
• delete
• patch