Analysisargs Resource ========================================================================== Resource URL: ``http://mytorrentserver/rundb/api/v1/analysisargs/`` Schema URL: ``http://mytorrentserver/rundb/api/v1/analysisargs/schema/`` .. include:: ../manual_api_ref_docs/analysisargs.rst Fields table ------------ ============================== ====================================== ======= ======== ======== ===== ====== ======= field help text default nullable readonly blank unique type ============================== ====================================== ======= ======== ======== ===== ====== ======= **templateKitName** Unicode string data. Ex: "Hello World" false false true false string ------------------------------ -------------------------------------- ------- -------- -------- ----- ------ ------- **prebasecallerargs** Unicode string data. Ex: "Hello World" false false true false string ------------------------------ -------------------------------------- ------- -------- -------- ----- ------ ------- **libraryKitName** Unicode string data. Ex: "Hello World" false false true false string ------------------------------ -------------------------------------- ------- -------- -------- ----- ------ ------- **name** Unicode string data. Ex: "Hello World" n/a false false false true string ------------------------------ -------------------------------------- ------- -------- -------- ----- ------ ------- **chipType** Unicode string data. Ex: "Hello World" false false false false string ------------------------------ -------------------------------------- ------- -------- -------- ----- ------ ------- **alignmentargs** Unicode string data. Ex: "Hello World" false false true false string ------------------------------ -------------------------------------- ------- -------- -------- ----- ------ ------- **thumbnailbasecallerargs** Unicode string data. Ex: "Hello World" false false true false string ------------------------------ -------------------------------------- ------- -------- -------- ----- ------ ------- **sequenceKitName** Unicode string data. Ex: "Hello World" false false true false string ------------------------------ -------------------------------------- ------- -------- -------- ----- ------ ------- **analysisargs** Unicode string data. Ex: "Hello World" false false true false string ------------------------------ -------------------------------------- ------- -------- -------- ----- ------ ------- **basecallerargs** Unicode string data. Ex: "Hello World" false false true false string ------------------------------ -------------------------------------- ------- -------- -------- ----- ------ ------- **thumbnailanalysisargs** Unicode string data. Ex: "Hello World" false false true false string ------------------------------ -------------------------------------- ------- -------- -------- ----- ------ ------- **chip_default** Boolean data. Ex: True false false false true false boolean ------------------------------ -------------------------------------- ------- -------- -------- ----- ------ ------- **thumbnailalignmentargs** Unicode string data. Ex: "Hello World" false false true false string ------------------------------ -------------------------------------- ------- -------- -------- ----- ------ ------- **samplePrepKitName** Unicode string data. Ex: "Hello World" false false true false string ------------------------------ -------------------------------------- ------- -------- -------- ----- ------ ------- **active** Boolean data. Ex: True true false false true false boolean ------------------------------ -------------------------------------- ------- -------- -------- ----- ------ ------- **prethumbnailbasecallerargs** Unicode string data. Ex: "Hello World" false false true false string ------------------------------ -------------------------------------- ------- -------- -------- ----- ------ ------- **beadfindargs** Unicode string data. Ex: "Hello World" false false true false string ------------------------------ -------------------------------------- ------- -------- -------- ----- ------ ------- **thumbnailbeadfindargs** Unicode string data. Ex: "Hello World" false false true false string ------------------------------ -------------------------------------- ------- -------- -------- ----- ------ ------- **id** Integer data. Ex: 2673 false false true true integer ------------------------------ -------------------------------------- ------- -------- -------- ----- ------ ------- **resource_uri** Unicode string data. Ex: "Hello World" n/a false true false false string ============================== ====================================== ======= ======== ======== ===== ====== ======= Example request --------------- Request URL: ``http://mytorrentserver/rundb/api/v1/analysisargs/?format=json&limit=1`` Python example ^^^^^^^^^^^^^^ .. code-block:: python import requests ts_api_request = requests.get("http://mytorrentserver/rundb/api/v1/analysisargs/", params={"format": "json", "limit": 1}) ts_api_response = ts_api_request.json() analysisargss = ts_api_response["objects"] for analysisargs in analysisargss: print analysisargs Torrent Server response ^^^^^^^^^^^^^^^^^^^^^^^ .. code-block:: javascript { "meta": { "previous": null, "total_count": 19, "offset": 0, "limit": 1, "next": "/rundb/api/v1/analysisargs/?offset=1&limit=1&format=json" }, "objects": [ { "templateKitName": "", "prebasecallerargs": "BaseCaller --keypass-filter on --phasing-residual-filter=2.0 --trim-qual-cutoff 15 --trim-qual-window-size 30 --trim-adapter-cutoff 16 --num-unfiltered 1000 --calibration-training=100000 --flow-signals-type scaled-residual --max-phasing-levels 2", "libraryKitName": "", "name": "AmpliseqExome_V3", "chipType": "P1.1.17", "alignmentargs": "stage1 map4", "thumbnailbasecallerargs": "BaseCaller --keypass-filter on --phasing-residual-filter=2.0 --trim-qual-cutoff 15 --trim-qual-window-size 30 --trim-adapter-cutoff 16 --num-unfiltered 100000", "sequenceKitName": "ProtonI200Kit-v3", "analysisargs": "Analysis --from-beadfind --clonal-filter-bkgmodel on --region-size=216x224 --bkg-bfmask-update off --gpuWorkLoad 1 --total-timeout 600 --gopt /opt/ion/config/gopt_p1.1.17_ampliseq_exome.param.json", "basecallerargs": "BaseCaller --keypass-filter on --phasing-residual-filter=2.0 --trim-qual-cutoff 15 --trim-qual-window-size 30 --trim-adapter-cutoff 16 --num-unfiltered 1000", "thumbnailanalysisargs": "Analysis --from-beadfind --clonal-filter-bkgmodel on --region-size=100x100 --bkg-bfmask-update off --gpuWorkLoad 1 --bkg-debug-param 1 --beadfind-thumbnail 1 --gopt /opt/ion/config/gopt_p1.1.17_ampliseq_exome.param.json", "chip_default": false, "thumbnailalignmentargs": "stage1 map4", "samplePrepKitName": "Ion AmpliSeq Exome Kit", "active": true, "prethumbnailbasecallerargs": "BaseCaller --keypass-filter on --phasing-residual-filter=2.0 --trim-qual-cutoff 15 --trim-qual-window-size 30 --trim-adapter-cutoff 16 --num-unfiltered 100000 --calibration-training=100000 --flow-signals-type scaled-residual", "beadfindargs": "justBeadFind --beadfind-minlivesnr 3 --region-size=216x224 --total-timeout 600", "thumbnailbeadfindargs": "justBeadFind --beadfind-minlivesnr 3 --region-size=100x100 --beadfind-thumbnail 1", "id": 18, "resource_uri": "/rundb/api/v1/analysisargs/18/" } ] } Allowed HTTP methods -------------------- - get - post - put - delete - patch