Ion Chef Plan Template Resource¶

Resource URL http://mytorrentserver/rundb/api/v1/ionchefplantemplate/
Schema URL http://mytorrentserver/rundb/api/v1/ionchefplantemplate/schema/

Resource Fields¶

field	help text	default	nullable	readonly	blank	unique	type
adapter	Unicode string data. Ex: “Hello World”	n/a	true	false	false	false	string
applicationCategoryDisplayedName	Unicode string data. Ex: “Hello World”	n/a	true	true	true	false	string
applicationGroup	A single related resource. Can be either a URI or set of nested resource data.	n/a	true	false	true	false	related
applicationGroupDisplayedName	Unicode string data. Ex: “Hello World”	n/a	true	true	true	false	string
autoAnalyze	Boolean data. Ex: True	n/a	false	false	false	false	boolean
autoName	Unicode string data. Ex: “Hello World”	n/a	true	false	false	false	string
barcodeId	Unicode string data. Ex: “Hello World”		true	false	true	false	string
barcodedSamples	Unicode string data. Ex: “Hello World”		true	false	true	false	string
base_recalibration_mode	Unicode string data. Ex: “Hello World”		true	false	true	false	string
bedfile	Unicode string data. Ex: “Hello World”		false	false	true	false	string
categories	Unicode string data. Ex: “Hello World”		true	false	false	false	string
chefInfo	A dictionary of data. Ex: {‘price’: 26.73, ‘name’: ‘Daniel’}	{}	false	false	false	false	dict
childPlans	A list of data. Ex: [‘abc’, 26.73, 8]	[]	false	false	false	false	list
chipBarcode	Unicode string data. Ex: “Hello World”		false	false	false	false	string
chipType	Unicode string data. Ex: “Hello World”		false	false	false	false	string
controlSequencekitname	Unicode string data. Ex: “Hello World”	n/a	true	false	false	false	string
cycles	Integer data. Ex: 2673	n/a	true	false	false	false	integer
date	A date & time as a string. Ex: “2010-11-10T03:07:43”	n/a	true	false	false	false	datetime
earlyDatFileDeletion	Boolean data. Ex: True	false	false	true	false	false	boolean
endBarcodeKitName	Unicode string data. Ex: “Hello World”		true	false	true	false	string
expName	Unicode string data. Ex: “Hello World”		false	false	true	false	string
experiment	A single related resource. Can be either a URI or set of nested resource data.	n/a	true	false	true	false	related
flows	Integer data. Ex: 2673	0	false	false	false	false	integer
flowsInOrder	Unicode string data. Ex: “Hello World”		true	false	true	false	string
forward3primeadapter	Unicode string data. Ex: “Hello World”		true	false	true	false	string
id	Integer data. Ex: 2673		false	false	true	true	integer
irworkflow	Unicode string data. Ex: “Hello World”		false	false	true	false	string
isCustom_kitSettings	Boolean data. Ex: True	false	false	false	true	false	boolean
isDuplicateReads	Boolean data. Ex: True	n/a	false	false	false	false	boolean
isFavorite	Boolean data. Ex: True	false	false	false	true	false	boolean
isPlanGroup	Boolean data. Ex: True	false	false	false	true	false	boolean
isReusable	Boolean data. Ex: True	false	false	false	true	false	boolean
isReverseRun	Boolean data. Ex: True	false	false	false	true	false	boolean
isSystem	Boolean data. Ex: True	false	false	false	true	false	boolean
isSystemDefault	Boolean data. Ex: True	false	false	false	true	false	boolean
libkit	Unicode string data. Ex: “Hello World”	n/a	true	false	false	false	string
library	Unicode string data. Ex: “Hello World”		true	false	true	false	string
libraryKey	Unicode string data. Ex: “Hello World”		false	false	true	false	string
libraryPrepType	Unicode string data. Ex: “Hello World”		true	true	true	false	string
libraryPrepTypeDisplayedName	Unicode string data. Ex: “Hello World”		true	true	true	false	string
libraryReadLength	Integer data. Ex: 2673	0	false	false	false	false	integer
librarykitname	Unicode string data. Ex: “Hello World”		true	false	true	false	string
metaData	Unicode string data. Ex: “Hello World”	{}	false	false	true	false	string
mixedTypeRNA_hotSpotRegionBedFile	Unicode string data. Ex: “Hello World”		false	false	true	false	string
mixedTypeRNA_reference	Unicode string data. Ex: “Hello World”		true	false	true	false	string
mixedTypeRNA_targetRegionBedFile	Unicode string data. Ex: “Hello World”		false	false	true	false	string
notes	Unicode string data. Ex: “Hello World”		true	false	true	false	string
origin	Unicode string data. Ex: “Hello World”		true	false	false	false	string
pairedEndLibraryAdapterName	Unicode string data. Ex: “Hello World”	n/a	true	false	false	false	string
parentPlan	Unicode string data. Ex: “Hello World”	None	false	false	true	false	string
planDisplayedName	Unicode string data. Ex: “Hello World”	n/a	true	false	false	false	string
planExecuted	Boolean data. Ex: True	false	false	false	true	false	boolean
planExecutedDate	A date & time as a string. Ex: “2010-11-10T03:07:43”	n/a	true	false	false	false	datetime
planGUID	Unicode string data. Ex: “Hello World”	n/a	true	false	false	false	string
planName	Unicode string data. Ex: “Hello World”	n/a	true	false	false	false	string
planPGM	Unicode string data. Ex: “Hello World”	n/a	true	false	false	false	string
planShortID	Unicode string data. Ex: “Hello World”	n/a	true	false	false	false	string
planStatus	Unicode string data. Ex: “Hello World”		false	false	true	false	string
platform	Unicode string data. Ex: “Hello World”	n/a	true	false	true	false	string
preAnalysis	Boolean data. Ex: True	true	false	false	true	false	boolean
project	Unicode string data. Ex: “Hello World”	n/a	false	true	true	false	string
projects	Many related resources. Can be either a list of URIs or list of individually nested resource data.	n/a	true	false	true	false	related
qcValues	Many related resources. Can be either a list of URIs or list of individually nested resource data.	n/a	true	false	true	false	related
realign	Boolean data. Ex: True	n/a	false	false	false	false	boolean
regionfile	Unicode string data. Ex: “Hello World”		false	false	true	false	string
resource_uri	Unicode string data. Ex: “Hello World”	n/a	false	true	false	false	string
reverse3primeadapter	Unicode string data. Ex: “Hello World”		false	true	false	false	string
reverse_primer	Unicode string data. Ex: “Hello World”	n/a	true	false	false	false	string
reverselibrarykey	Unicode string data. Ex: “Hello World”		false	true	false	false	string
runMode	Unicode string data. Ex: “Hello World”		false	false	true	false	string
runType	Unicode string data. Ex: “Hello World”	GENS	false	false	false	false	string
runname	Unicode string data. Ex: “Hello World”	n/a	true	false	false	false	string
sample	Unicode string data. Ex: “Hello World”		true	false	true	false	string
sampleDisplayedName	Unicode string data. Ex: “Hello World”		true	false	true	false	string
sampleGrouping	A single related resource. Can be either a URI or set of nested resource data.	n/a	true	false	true	false	related
sampleGroupingName	Unicode string data. Ex: “Hello World”	n/a	true	true	true	false	string
samplePrepKitName	Unicode string data. Ex: “Hello World”	n/a	true	false	false	false	string
samplePrepProtocol	Unicode string data. Ex: “Hello World”		true	false	false	false	string
sampleSetDisplayedName	Unicode string data. Ex: “Hello World”	n/a	true	true	true	false	string
sampleSets	Many related resources. Can be either a list of URIs or list of individually nested resource data.	n/a	true	false	true	false	related
sampleTubeLabel	Unicode string data. Ex: “Hello World”	n/a	true	false	false	false	string
selectedPlugins	Unicode string data. Ex: “Hello World”		true	false	true	false	string
seqKitBarcode	Unicode string data. Ex: “Hello World”	n/a	true	false	false	false	string
sequencekitname	Unicode string data. Ex: “Hello World”		true	false	true	false	string
sseBedFile	Unicode string data. Ex: “Hello World”		false	false	true	false	string
storageHost	Unicode string data. Ex: “Hello World”	n/a	true	false	false	false	string
storage_options	Unicode string data. Ex: “Hello World”	A	false	false	false	false	string
templatingKitBarcode	Unicode string data. Ex: “Hello World”	n/a	true	false	false	false	string
templatingKitName	Unicode string data. Ex: “Hello World”	n/a	true	false	false	false	string
tfKey	Unicode string data. Ex: “Hello World”		false	false	true	false	string
usePostBeadfind	Boolean data. Ex: True	true	false	false	true	false	boolean
usePreBeadfind	Boolean data. Ex: True	true	false	false	true	false	boolean
username	Unicode string data. Ex: “Hello World”	n/a	true	false	false	false	string
variantfrequency	Unicode string data. Ex: “Hello World”		false	true	false	false	string

Example Response¶

{
    "meta": {
        "limit": 1,
        "next": "/rundb/api/v1/ionchefplantemplate/?offset=1&limit=1&format=json",
        "offset": 0,
        "previous": null,
        "total_count": 89
    },
    "objects": [
        {
            "adapter": null,
            "alignmentargs": "",
            "analysisargs": "",
            "applicationCategoryDisplayedName": "Oncology - Solid Tumor",
            "applicationGroup": "/rundb/api/v1/applicationgroup/5/",
            "applicationGroupDisplayedName": "DNA and Fusions (Separate Libraries)",
            "autoAnalyze": true,
            "autoName": null,
            "barcodeId": "Ion Dual Barcode Kit 1-96",
            "barcodedSamples": {},
            "base_recalibration_mode": "standard_recal",
            "basecallerargs": "",
            "beadfindargs": "",
            "bedfile": "",
            "calibrateargs": "",
            "categories": "Oncomine;onco_solidTumor;barcodes_8;p4o",
            "chefInfo": {},
            "childPlans": [],
            "chipBarcode": "",
            "chipType": "530",
            "controlSequencekitname": null,
            "custom_args": false,
            "cycles": null,
            "date": "2019-10-03T20:53:08.000623+00:00",
            "earlyDatFileDeletion": false,
            "endBarcodeKitName": "",
            "expName": "",
            "experiment": "/rundb/api/v1/experiment/163/",
            "flows": 500,
            "flowsInOrder": "",
            "forward3primeadapter": "ATCACCGACTGCCCATAGAGAGGCTGAGAC",
            "id": 170,
            "ionstatsargs": "",
            "irworkflow": "",
            "isCustom_kitSettings": false,
            "isDuplicateReads": false,
            "isFavorite": false,
            "isPlanGroup": false,
            "isReusable": true,
            "isReverseRun": false,
            "isSystem": true,
            "isSystemDefault": false,
            "libkit": null,
            "library": "",
            "libraryKey": "TCAG",
            "libraryPrepType": "",
            "libraryPrepTypeDisplayedName": "",
            "libraryReadLength": 200,
            "librarykitname": "Ion AmpliSeq Library Kit Plus",
            "metaData": {},
            "mixedTypeRNA_hotSpotRegionBedFile": null,
            "mixedTypeRNA_reference": null,
            "mixedTypeRNA_targetRegionBedFile": null,
            "notes": "",
            "origin": "|5.12.1",
            "pairedEndLibraryAdapterName": null,
            "parentPlan": null,
            "planDisplayedName": "Oncomine Tumor Specific Fusions",
            "planExecuted": false,
            "planExecutedDate": null,
            "planGUID": "aa9309c5-5922-49f3-b901-987383b03e57",
            "planName": "Oncomine_Tumor_Specific_Fusions",
            "planPGM": "",
            "planShortID": "OZT4F",
            "planStatus": "inactive",
            "platform": "S5",
            "preAnalysis": true,
            "prebasecallerargs": "",
            "prethumbnailbasecallerargs": "",
            "project": "",
            "projects": [],
            "qcValues": [
                {
                    "id": 487,
                    "plannedExperiment": "/rundb/api/v1/plannedexperiment/170/",
                    "qcType": {
                        "defaultThreshold": 30,
                        "description": "",
                        "id": 1,
                        "maxThreshold": 100,
                        "minThreshold": 0,
                        "qcName": "Bead Loading (%)",
                        "resource_uri": "/rundb/api/v1/qctype/1/"
                    },
                    "resource_uri": "/rundb/api/v1/plannedexperimentqc/487/",
                    "threshold": 30
                },
                {
                    "id": 488,
                    "plannedExperiment": "/rundb/api/v1/plannedexperiment/170/",
                    "qcType": {
                        "defaultThreshold": 30,
                        "description": "",
                        "id": 2,
                        "maxThreshold": 100,
                        "minThreshold": 1,
                        "qcName": "Key Signal (1-100)",
                        "resource_uri": "/rundb/api/v1/qctype/2/"
                    },
                    "resource_uri": "/rundb/api/v1/plannedexperimentqc/488/",
                    "threshold": 30
                },
                {
                    "id": 489,
                    "plannedExperiment": "/rundb/api/v1/plannedexperiment/170/",
                    "qcType": {
                        "defaultThreshold": 30,
                        "description": "",
                        "id": 3,
                        "maxThreshold": 100,
                        "minThreshold": 0,
                        "qcName": "Usable Sequence (%)",
                        "resource_uri": "/rundb/api/v1/qctype/3/"
                    },
                    "resource_uri": "/rundb/api/v1/plannedexperimentqc/489/",
                    "threshold": 30
                }
            ],
            "realign": false,
            "regionfile": "",
            "resource_uri": "/rundb/api/v1/ionchefplantemplate/170/",
            "reverse3primeadapter": "",
            "reverse_primer": null,
            "reverselibrarykey": "",
            "runMode": "single",
            "runType": "AMPS_RNA",
            "runname": null,
            "sample": "",
            "sampleDisplayedName": "",
            "sampleGrouping": "/rundb/api/v1/samplegrouptype_cv/7/",
            "sampleGroupingName": "Single Fusions",
            "samplePrepKitName": null,
            "samplePrepProtocol": "",
            "sampleSetDisplayedName": "",
            "sampleSets": [],
            "sampleTubeLabel": null,
            "selectedPlugins": {},
            "seqKitBarcode": null,
            "sequencekitname": "Ion S5 Sequencing Kit",
            "sseBedFile": "",
            "storageHost": null,
            "storage_options": "A",
            "templatingKitBarcode": null,
            "templatingKitName": "Ion Chef S530 V2",
            "tfKey": "ATCG",
            "thumbnailalignmentargs": "",
            "thumbnailanalysisargs": "",
            "thumbnailbasecallerargs": "",
            "thumbnailbeadfindargs": "",
            "thumbnailcalibrateargs": "",
            "thumbnailionstatsargs": "",
            "usePostBeadfind": false,
            "usePreBeadfind": true,
            "username": null,
            "variantfrequency": ""
        }
    ]
}

Allowed list HTTP methods¶

GET
POST
PUT
DELETE
PATCH

Allowed detail HTTP methods¶

GET
POST
PUT
DELETE
PATCH