Composite Experiment Resource¶
Resource URL
http://mytorrentserver/rundb/api/mesh/v1/compositeexperiment/
Schema URL
http://mytorrentserver/rundb/api/mesh/v1/compositeexperiment/schema/
Resource Fields¶
field | help text | default | nullable | readonly | blank | unique | type |
---|---|---|---|---|---|---|---|
_host | Host this resource is located on. | n/a | false | true | false | false | string |
chefReagentsSerialNum | Unicode string data. Ex: “Hello World” | false | false | true | false | string | |
chefSolutionsSerialNum | Unicode string data. Ex: “Hello World” | false | false | true | false | string | |
chefStartTime | A date & time as a string. Ex: “2010-11-10T03:07:43” | n/a | true | false | false | false | datetime |
chipType | Unicode string data. Ex: “Hello World” | n/a | false | false | false | false | string |
date | A date & time as a string. Ex: “2010-11-10T03:07:43” | n/a | false | false | false | false | datetime |
displayName | Unicode string data. Ex: “Hello World” | false | false | false | false | string | |
expName | Unicode string data. Ex: “Hello World” | n/a | false | false | false | false | string |
flows | Integer data. Ex: 2673 | n/a | false | false | false | false | integer |
ftpStatus | Unicode string data. Ex: “Hello World” | false | false | true | false | string | |
id | Integer data. Ex: 2673 | false | false | true | true | integer | |
notes | Unicode string data. Ex: “Hello World” | n/a | true | false | false | false | string |
pgmName | Unicode string data. Ex: “Hello World” | n/a | false | false | false | false | string |
plan | A single related resource. Can be either a URI or set of nested resource data. | n/a | true | false | true | false | related |
platform | Unicode string data. Ex: “Hello World” | false | false | true | false | string | |
repResult | A single related resource. Can be either a URI or set of nested resource data. | n/a | true | false | true | false | related |
resource_uri | Unicode string data. Ex: “Hello World” | n/a | false | true | false | false | string |
resultDate | A date & time as a string. Ex: “2010-11-10T03:07:43” | true | true | false | false | false | datetime |
results | Many related resources. Can be either a list of URIs or list of individually nested resource data. | n/a | false | false | false | false | related |
runMode | Unicode string data. Ex: “Hello World” | false | false | true | false | string | |
star | Boolean data. Ex: True | false | false | false | true | false | boolean |
status | Unicode string data. Ex: “Hello World” | false | false | true | false | string | |
storage_options | Unicode string data. Ex: “Hello World” | A | false | false | false | false | string |
Example Response¶
{
"meta": {
"limit": 1,
"next": "/rundb/api/mesh/v1/compositeexperiment/?offset=1&limit=1&format=json",
"offset": 0,
"previous": null,
"total_count": 146
},
"objects": [
{
"_host": "hawk.itw",
"applicationCategoryDisplayedName": "AmpliSeq DNA and Fusions",
"barcodeId": "IonCode Barcodes 1-32",
"barcodedSamples": {},
"chefReagentsSerialNum": "",
"chefSolutionsSerialNum": "",
"chefStartTime": null,
"chipDescription": "540",
"chipInstrumentType": "S5",
"chipType": "540",
"date": "2019-10-03T22:24:50+00:00",
"displayName": "user S16-754-R153458-540 DNA33-RNA18 OCAv3 AO-1002",
"expName": "R_2019_10_03_15_23_03_user_S16-754-R153458-540_DNA33-RNA18_OCAv3_AO-1002",
"flows": 400,
"ftpStatus": "Complete",
"id": 1800,
"keep": false,
"library": "hg19",
"notes": "",
"pgmName": "S16",
"plan": {
"id": 1808,
"resource_uri": "",
"runType": "AMPS_DNA_RNA",
"sampleTubeLabel": null
},
"platform": "S5",
"references": "hg19",
"repResult": "/rundb/api/v1/compositeresult/1921/",
"resource_uri": "/rundb/api/mesh/v1/compositeexperiment/1800/",
"resultDate": "2019-10-04T02:55:43.000359+00:00",
"results": [
{
"analysis_metrics": {
"bead": 144205030,
"empty": 5365643,
"excluded": 13159848,
"id": 1785,
"ignored": 1554120,
"lib": 143117241,
"libFinal": 72109222,
"live": 144191568,
"pinned": 414495,
"resource_uri": "",
"total_wells": 164699136
},
"analysismetrics": {
"bead": 144205030,
"empty": 5365643,
"excluded": 13159848,
"id": 1785,
"ignored": 1554120,
"lib": 143117241,
"libFinal": 72109222,
"live": 144191568,
"pinned": 414495,
"resource_uri": "",
"total_wells": 164699136
},
"autoExempt": false,
"eas": {
"barcodeKitName": "IonCode Barcodes 1-32",
"chipType": "540",
"isPQ": false,
"reference": "hg19",
"references": "hg19",
"resource_uri": ""
},
"i18nstatus": {
"i18n": "Completed",
"state": "Completed"
},
"id": 1920,
"isShowAllMetrics": true,
"libmetrics": {
"aveKeyCounts": 100,
"i100Q20_reads": 32512585,
"id": 1632,
"q20_mean_alignment_length": 98,
"resource_uri": ""
},
"processedflows": 0,
"projects": [
{
"id": 179,
"modified": "2019-10-04T22:30:21.000322+00:00",
"name": "Valkyrie",
"resource_uri": ""
}
],
"quality_metrics": {
"id": 1633,
"q0_bases": "8055445299",
"q0_mean_read_length": 111.714116247485,
"q0_reads": 72107676,
"q20_bases": "7144330852",
"q20_mean_read_length": 111,
"q20_reads": 72107676,
"resource_uri": ""
},
"qualitymetrics": {
"id": 1633,
"q0_bases": "8055445299",
"q0_mean_read_length": 111.714116247485,
"q0_reads": 72107676,
"q20_bases": "7144330852",
"q20_mean_read_length": 111,
"q20_reads": 72107676,
"resource_uri": ""
},
"reportLink": "/output/Home/Auto_user_S16-754-R153458-540_DNA33-RNA18_OCAv3_AO-1002_1800_1920/",
"reportStatus": "Nothing",
"representative": false,
"resource_uri": "/rundb/api/v1/compositeresult/1920/",
"resultsName": "Auto_user_S16-754-R153458-540_DNA33-RNA18_OCAv3_AO-1002_1800",
"status": "Completed",
"status_display": "Completed",
"timeStamp": "2019-10-04T02:55:43.000359+00:00"
},
{
"analysis_metrics": {
"bead": 882703,
"empty": 30634,
"excluded": 39760,
"id": 1784,
"ignored": 6104,
"lib": 876208,
"libFinal": 440446,
"live": 882647,
"pinned": 799,
"resource_uri": "",
"total_wells": 960000
},
"analysismetrics": {
"bead": 882703,
"empty": 30634,
"excluded": 39760,
"id": 1784,
"ignored": 6104,
"lib": 876208,
"libFinal": 440446,
"live": 882647,
"pinned": 799,
"resource_uri": "",
"total_wells": 960000
},
"autoExempt": false,
"eas": {
"barcodeKitName": "IonCode Barcodes 1-32",
"chipType": "540",
"isPQ": false,
"reference": "hg19",
"references": "hg19",
"resource_uri": ""
},
"i18nstatus": {
"i18n": "Completed",
"state": "Completed"
},
"id": 1921,
"isShowAllMetrics": true,
"libmetrics": {
"aveKeyCounts": 104,
"i100Q20_reads": 195606,
"id": 1631,
"q20_mean_alignment_length": 98,
"resource_uri": ""
},
"processedflows": 400,
"projects": [
{
"id": 179,
"modified": "2019-10-04T22:30:21.000322+00:00",
"name": "Valkyrie",
"resource_uri": ""
}
],
"quality_metrics": {
"id": 1632,
"q0_bases": "49082942",
"q0_mean_read_length": 111.441965329731,
"q0_reads": 440435,
"q20_bases": "43452424",
"q20_mean_read_length": 111,
"q20_reads": 440435,
"resource_uri": ""
},
"qualitymetrics": {
"id": 1632,
"q0_bases": "49082942",
"q0_mean_read_length": 111.441965329731,
"q0_reads": 440435,
"q20_bases": "43452424",
"q20_mean_read_length": 111,
"q20_reads": 440435,
"resource_uri": ""
},
"reportLink": "/output/Home/Auto_user_S16-754-R153458-540_DNA33-RNA18_OCAv3_AO-1002_1800_tn_1921/",
"reportStatus": "Nothing",
"representative": false,
"resource_uri": "/rundb/api/v1/compositeresult/1921/",
"resultsName": "Auto_user_S16-754-R153458-540_DNA33-RNA18_OCAv3_AO-1002_1800_tn",
"status": "Completed",
"status_display": "Completed",
"timeStamp": "2019-10-04T00:39:45.000429+00:00"
}
],
"runMode": "single",
"sample": "",
"sampleDisplayedName": "",
"sampleSetName": "",
"star": false,
"status": "run",
"storage_options": "A"
}
],
"warnings": [
"The Torrent Server(s) phuket.itw,hawk.itw have too many results to display. Only experiments newer than 2018-10-26 are displayed. Try searching or adding additional filters.",
"Could not fetch runs from Torrent Server(s) tsautotest17.itw!"
]
}
Allowed list HTTP methods¶
- GET
- POST
- PUT
- DELETE
- PATCH
Allowed detail HTTP methods¶
- GET
- POST
- PUT
- DELETE
- PATCH