Available Onetouch Planned Experiment Resource

Resource URL http://mytorrentserver/rundb/api/v1/availableonetouchplannedexperiment/
Schema URL http://mytorrentserver/rundb/api/v1/availableonetouchplannedexperiment/schema/

Resource Fields

field help text default nullable readonly blank unique type
adapter Unicode string data. Ex: “Hello World” n/a true false false false string
applicationCategoryDisplayedName Unicode string data. Ex: “Hello World” n/a true true true false string
applicationGroup A single related resource. Can be either a URI or set of nested resource data. n/a true false true false related
applicationGroupDisplayedName Unicode string data. Ex: “Hello World” n/a true true true false string
autoAnalyze Boolean data. Ex: True n/a false false false false boolean
autoName Unicode string data. Ex: “Hello World” n/a true false false false string
barcodeId Unicode string data. Ex: “Hello World”   true false true false string
barcodedSamples Unicode string data. Ex: “Hello World”   true false true false string
base_recalibration_mode Unicode string data. Ex: “Hello World”   true false true false string
bedfile Unicode string data. Ex: “Hello World”   false false true false string
categories Unicode string data. Ex: “Hello World”   true false false false string
chefInfo A dictionary of data. Ex: {‘price’: 26.73, ‘name’: ‘Daniel’} {} false false false false dict
childPlans A list of data. Ex: [‘abc’, 26.73, 8] [] false false false false list
chipBarcode Unicode string data. Ex: “Hello World”   false false false false string
chipType Unicode string data. Ex: “Hello World”   false false false false string
controlSequencekitname Unicode string data. Ex: “Hello World” n/a true false false false string
cycles Integer data. Ex: 2673 n/a true false false false integer
date A date & time as a string. Ex: “2010-11-10T03:07:43” n/a true false false false datetime
earlyDatFileDeletion Boolean data. Ex: True false false true false false boolean
endBarcodeKitName Unicode string data. Ex: “Hello World”   true false true false string
expName Unicode string data. Ex: “Hello World”   false false true false string
experiment A single related resource. Can be either a URI or set of nested resource data. n/a true false true false related
flows Integer data. Ex: 2673 0 false false false false integer
flowsInOrder Unicode string data. Ex: “Hello World”   true false true false string
forward3primeadapter Unicode string data. Ex: “Hello World”   true false true false string
id Integer data. Ex: 2673   false false true true integer
irworkflow Unicode string data. Ex: “Hello World”   false false true false string
isCustom_kitSettings Boolean data. Ex: True false false false true false boolean
isDuplicateReads Boolean data. Ex: True n/a false false false false boolean
isFavorite Boolean data. Ex: True false false false true false boolean
isPlanGroup Boolean data. Ex: True false false false true false boolean
isReusable Boolean data. Ex: True false false false true false boolean
isReverseRun Boolean data. Ex: True false false false true false boolean
isSystem Boolean data. Ex: True false false false true false boolean
isSystemDefault Boolean data. Ex: True false false false true false boolean
libkit Unicode string data. Ex: “Hello World” n/a true false false false string
library Unicode string data. Ex: “Hello World”   true false true false string
libraryKey Unicode string data. Ex: “Hello World”   false false true false string
libraryPrepType Unicode string data. Ex: “Hello World”   true true true false string
libraryPrepTypeDisplayedName Unicode string data. Ex: “Hello World”   true true true false string
libraryReadLength Integer data. Ex: 2673 0 false false false false integer
librarykitname Unicode string data. Ex: “Hello World”   true false true false string
metaData Unicode string data. Ex: “Hello World” {} false false true false string
mixedTypeRNA_hotSpotRegionBedFile Unicode string data. Ex: “Hello World”   false false true false string
mixedTypeRNA_reference Unicode string data. Ex: “Hello World”   true false true false string
mixedTypeRNA_targetRegionBedFile Unicode string data. Ex: “Hello World”   false false true false string
notes Unicode string data. Ex: “Hello World”   true false true false string
origin Unicode string data. Ex: “Hello World”   true false false false string
pairedEndLibraryAdapterName Unicode string data. Ex: “Hello World” n/a true false false false string
parentPlan Unicode string data. Ex: “Hello World” None false false true false string
planDisplayedName Unicode string data. Ex: “Hello World” n/a true false false false string
planExecuted Boolean data. Ex: True false false false true false boolean
planExecutedDate A date & time as a string. Ex: “2010-11-10T03:07:43” n/a true false false false datetime
planGUID Unicode string data. Ex: “Hello World” n/a true false false false string
planName Unicode string data. Ex: “Hello World” n/a true false false false string
planPGM Unicode string data. Ex: “Hello World” n/a true false false false string
planShortID Unicode string data. Ex: “Hello World” n/a true false false false string
planStatus Unicode string data. Ex: “Hello World”   false false true false string
platform Unicode string data. Ex: “Hello World” n/a true false true false string
preAnalysis Boolean data. Ex: True true false false true false boolean
project Unicode string data. Ex: “Hello World” n/a false true true false string
projects Many related resources. Can be either a list of URIs or list of individually nested resource data. n/a true false true false related
qcValues Many related resources. Can be either a list of URIs or list of individually nested resource data. n/a true false true false related
realign Boolean data. Ex: True n/a false false false false boolean
regionfile Unicode string data. Ex: “Hello World”   false false true false string
resource_uri Unicode string data. Ex: “Hello World” n/a false true false false string
reverse3primeadapter Unicode string data. Ex: “Hello World”   false true false false string
reverse_primer Unicode string data. Ex: “Hello World” n/a true false false false string
reverselibrarykey Unicode string data. Ex: “Hello World”   false true false false string
runMode Unicode string data. Ex: “Hello World”   false false true false string
runType Unicode string data. Ex: “Hello World” GENS false false false false string
runname Unicode string data. Ex: “Hello World” n/a true false false false string
sample Unicode string data. Ex: “Hello World”   true false true false string
sampleDisplayedName Unicode string data. Ex: “Hello World”   true false true false string
sampleGrouping A single related resource. Can be either a URI or set of nested resource data. n/a true false true false related
sampleGroupingName Unicode string data. Ex: “Hello World” n/a true true true false string
samplePrepKitName Unicode string data. Ex: “Hello World” n/a true false false false string
samplePrepProtocol Unicode string data. Ex: “Hello World”   true false false false string
sampleSetDisplayedName Unicode string data. Ex: “Hello World” n/a true true true false string
sampleSets Many related resources. Can be either a list of URIs or list of individually nested resource data. n/a true false true false related
sampleTubeLabel Unicode string data. Ex: “Hello World” n/a true false false false string
selectedPlugins Unicode string data. Ex: “Hello World”   true false true false string
seqKitBarcode Unicode string data. Ex: “Hello World” n/a true false false false string
sequencekitname Unicode string data. Ex: “Hello World”   true false true false string
sseBedFile Unicode string data. Ex: “Hello World”   false false true false string
storageHost Unicode string data. Ex: “Hello World” n/a true false false false string
storage_options Unicode string data. Ex: “Hello World” A false false false false string
templatingKitBarcode Unicode string data. Ex: “Hello World” n/a true false false false string
templatingKitName Unicode string data. Ex: “Hello World” n/a true false false false string
tfKey Unicode string data. Ex: “Hello World”   false false true false string
usePostBeadfind Boolean data. Ex: True true false false true false boolean
usePreBeadfind Boolean data. Ex: True true false false true false boolean
username Unicode string data. Ex: “Hello World” n/a true false false false string
variantfrequency Unicode string data. Ex: “Hello World”   false true false false string

Example Response

{
    "meta": {
        "limit": 1,
        "next": "/rundb/api/v1/availableonetouchplannedexperiment/?offset=1&limit=1&format=json",
        "offset": 0,
        "previous": null,
        "total_count": 2
    },
    "objects": [
        {
            "adapter": null,
            "alignmentargs": "tmap mapall ... stage1 map4",
            "analysisargs": "Analysis --args-json /opt/ion/config/args_P1.1.17_analysis.json",
            "applicationCategoryDisplayedName": "",
            "applicationGroup": "/rundb/api/v1/applicationgroup/2/",
            "applicationGroupDisplayedName": "RNA",
            "autoAnalyze": true,
            "autoName": null,
            "barcodeId": "IonXpress",
            "barcodedSamples": {
                "Sample 1": {
                    "barcodeSampleInfo": {
                        "IonXpress_001": {
                            "controlSequenceType": "",
                            "controlType": "",
                            "description": "",
                            "endBarcode": "",
                            "externalId": "",
                            "hotSpotRegionBedFile": "",
                            "nucleotideType": "RNA",
                            "reference": "AmpliSeq_Mouse_Transcriptome_v1",
                            "sseBedFile": "",
                            "targetRegionBedFile": ""
                        }
                    },
                    "barcodes": [
                        "IonXpress_001"
                    ],
                    "dualBarcodes": []
                }
            },
            "base_recalibration_mode": "standard_recal",
            "basecallerargs": "BaseCaller --barcode-filter-minreads 10 --phasing-residual-filter=2.0 --max-phasing-levels 2 --num-unfiltered 1000 --barcode-filter-postpone 1",
            "beadfindargs": "justBeadFind --args-json /opt/ion/config/args_P1.1.17_beadfind.json",
            "bedfile": "",
            "calibrateargs": "Calibration",
            "categories": "",
            "chefInfo": {},
            "childPlans": [],
            "chipBarcode": "",
            "chipType": "P1.1.17",
            "controlSequencekitname": null,
            "custom_args": false,
            "cycles": null,
            "date": "2018-08-02T18:54:44.000297+00:00",
            "earlyDatFileDeletion": false,
            "endBarcodeKitName": "",
            "expName": "",
            "experiment": "/rundb/api/v1/experiment/137/",
            "flows": 500,
            "flowsInOrder": "",
            "forward3primeadapter": "ATCACCGACTGCCCATAGAGAGGCTGAGAC",
            "id": 144,
            "ionstatsargs": "ionstats alignment",
            "irworkflow": "",
            "isCustom_kitSettings": false,
            "isDuplicateReads": false,
            "isFavorite": false,
            "isPlanGroup": false,
            "isReusable": false,
            "isReverseRun": false,
            "isSystem": false,
            "isSystemDefault": false,
            "libkit": null,
            "library": "AmpliSeq_Mouse_Transcriptome_v1",
            "libraryKey": "TCAG",
            "libraryPrepType": "",
            "libraryPrepTypeDisplayedName": "",
            "libraryReadLength": 0,
            "librarykitname": "Ion AmpliSeq Library Kit Plus",
            "metaData": {
                "fromTemplate": "Ion_AmpliSeq_Transcriptome_Mouse_Gene_Expression_Panel_OT2-Proton",
                "fromTemplateSource": "ION"
            },
            "mixedTypeRNA_hotSpotRegionBedFile": "",
            "mixedTypeRNA_reference": "",
            "mixedTypeRNA_targetRegionBedFile": "",
            "notes": "",
            "origin": "gui|5.10.0",
            "pairedEndLibraryAdapterName": "",
            "parentPlan": null,
            "planDisplayedName": "Ion AmpliSeq Transcriptome Mouse Gene Expression ",
            "planExecuted": false,
            "planExecutedDate": null,
            "planGUID": "685ac1ca-9a42-4d9c-af2f-29a97706cb8e",
            "planName": "Ion_AmpliSeq_Transcriptome_Mouse_Gene_Expression",
            "planPGM": null,
            "planShortID": "YEN8M",
            "planStatus": "planned",
            "platform": "",
            "preAnalysis": true,
            "prebasecallerargs": "BaseCaller --barcode-filter-minreads 10 --phasing-residual-filter=2.0 --max-phasing-levels 2",
            "prethumbnailbasecallerargs": "BaseCaller --barcode-filter-minreads 10 --phasing-residual-filter=2.0",
            "project": "",
            "projects": [],
            "qcValues": [
                {
                    "id": 409,
                    "plannedExperiment": "/rundb/api/v1/plannedexperiment/144/",
                    "qcType": {
                        "defaultThreshold": 30,
                        "description": "",
                        "id": 1,
                        "maxThreshold": 100,
                        "minThreshold": 0,
                        "qcName": "Bead Loading (%)",
                        "resource_uri": "/rundb/api/v1/qctype/1/"
                    },
                    "resource_uri": "/rundb/api/v1/plannedexperimentqc/409/",
                    "threshold": 30
                },
                {
                    "id": 410,
                    "plannedExperiment": "/rundb/api/v1/plannedexperiment/144/",
                    "qcType": {
                        "defaultThreshold": 30,
                        "description": "",
                        "id": 2,
                        "maxThreshold": 100,
                        "minThreshold": 1,
                        "qcName": "Key Signal (1-100)",
                        "resource_uri": "/rundb/api/v1/qctype/2/"
                    },
                    "resource_uri": "/rundb/api/v1/plannedexperimentqc/410/",
                    "threshold": 30
                },
                {
                    "id": 411,
                    "plannedExperiment": "/rundb/api/v1/plannedexperiment/144/",
                    "qcType": {
                        "defaultThreshold": 30,
                        "description": "",
                        "id": 3,
                        "maxThreshold": 100,
                        "minThreshold": 0,
                        "qcName": "Usable Sequence (%)",
                        "resource_uri": "/rundb/api/v1/qctype/3/"
                    },
                    "resource_uri": "/rundb/api/v1/plannedexperimentqc/411/",
                    "threshold": 30
                }
            ],
            "realign": false,
            "regionfile": "",
            "resource_uri": "/rundb/api/v1/availableonetouchplannedexperiment/144/",
            "reverse3primeadapter": "",
            "reverse_primer": null,
            "reverselibrarykey": "",
            "runMode": "single",
            "runType": "AMPS_RNA",
            "runname": null,
            "sample": "",
            "sampleDisplayedName": "",
            "sampleGrouping": "/rundb/api/v1/samplegrouptype_cv/2/",
            "sampleGroupingName": "Self",
            "samplePrepKitName": null,
            "samplePrepProtocol": "",
            "sampleSetDisplayedName": "",
            "sampleSets": [],
            "sampleTubeLabel": "",
            "selectedPlugins": {
                "ampliSeqRNA": {
                    "features": [],
                    "id": 48,
                    "name": "ampliSeqRNA",
                    "userInput": {},
                    "version": "5.10.0.1"
                }
            },
            "seqKitBarcode": null,
            "sequencekitname": "ProtonI200Kit-v3",
            "sseBedFile": "",
            "storageHost": null,
            "storage_options": "A",
            "templatingKitBarcode": null,
            "templatingKitName": "Ion PI Template OT2 200 Kit v3",
            "tfKey": "ATCG",
            "thumbnailalignmentargs": "tmap mapall ... stage1 map4",
            "thumbnailanalysisargs": "Analysis --args-json /opt/ion/config/args_P1.1.17_analysis.json --thumbnail true",
            "thumbnailbasecallerargs": "BaseCaller --barcode-filter-minreads 10 --phasing-residual-filter=2.0",
            "thumbnailbeadfindargs": "justBeadFind --args-json /opt/ion/config/args_P1.1.17_beadfind.json --thumbnail true",
            "thumbnailcalibrateargs": "Calibration",
            "thumbnailionstatsargs": "ionstats alignment",
            "usePostBeadfind": false,
            "usePreBeadfind": true,
            "username": "ionadmin",
            "variantfrequency": ""
        }
    ]
}

Allowed list HTTP methods

  • GET
  • POST
  • PUT
  • DELETE
  • PATCH

Allowed detail HTTP methods

  • GET
  • POST
  • PUT
  • DELETE
  • PATCH