Content Resource¶
Resource URL
http://mytorrentserver/rundb/api/v1/content/Schema URL
http://mytorrentserver/rundb/api/v1/content/schema/Resource Fields¶
| field | help text | default | nullable | readonly | blank | unique | type |
|---|---|---|---|---|---|---|---|
| publisher | A single related resource. Can be either a URI or set of nested resource data. | n/a | false | false | false | false | related |
| description | Unicode string data. Ex: “Hello World” | false | false | true | false | string | |
| extra | Unicode string data. Ex: “Hello World” | false | false | true | false | string | |
| contentupload | A single related resource. Can be either a URI or set of nested resource data. | n/a | false | false | false | false | related |
| notes | Unicode string data. Ex: “Hello World” | false | false | true | false | string | |
| enabled | Boolean data. Ex: True | true | false | false | true | false | boolean |
| upload_date | A date & time as a string. Ex: “2010-11-10T03:07:43” | n/a | false | true | false | false | datetime |
| application_tags | Unicode string data. Ex: “Hello World” | false | false | true | false | string | |
| meta | Unicode string data. Ex: “Hello World” | {} | false | false | true | false | string |
| upload_id | Unicode string data. Ex: “Hello World” | n/a | false | true | false | false | string |
| file | Unicode string data. Ex: “Hello World” | n/a | false | false | false | false | string |
| path | Unicode string data. Ex: “Hello World” | n/a | false | false | false | false | string |
| resource_uri | Unicode string data. Ex: “Hello World” | n/a | false | true | false | false | string |
| type | Unicode string data. Ex: “Hello World” | false | false | true | false | string | |
| id | Integer data. Ex: 2673 | false | false | true | true | integer | |
| name | Unicode string data. Ex: “Hello World” | n/a | false | true | false | false | string |
Example Response¶
{
"meta": {
"previous": null,
"total_count": 31,
"offset": 0,
"limit": 1,
"next": "/rundb/api/v1/content/?offset=1&limit=1&format=json"
},
"objects": [
{
"publisher": "/rundb/api/v1/publisher/BED/",
"description": "Noonan Panel",
"extra": "hg19",
"contentupload": "/rundb/api/v1/contentupload/1/",
"notes": "",
"enabled": true,
"upload_date": "2018-01-16T18:30:05+00:00",
"application_tags": "",
"meta": {
"upload_date": "2018-01-16T18:30:05",
"description": "Noonan Panel",
"reference": "hg19",
"is_ampliseq": true,
"hotspot": false,
"choice": "pgm",
"num_targets": 268,
"num_genes": 14,
"design": {
"number_of_amplicon_pools": 2,
"design_name": "Noonan Panel",
"configuration_choices": [],
"solution_name": null,
"id": 60011570,
"number_of_amplicons": 268,
"genome_reference": null,
"target_size": 26992,
"genome": "hg19",
"type": "COMMUNITY_PANEL",
"status": "ORDERABLE",
"min_number_amplicons_per_pool": 132,
"description": "<table class=\"design-template-info-wrapper-table\">\r\n <tr>\r\n <td colspan=\"3\">\r\n <br>\r\n <p>Noonan syndrome is a relatively common autosomal dominant congenital disorder with a high phenotypic variability. It is a clinically and genetically heterogeneous disorder that belongs to the group of Rasopathy diseases, caused by mutations in genes dysregulating the RAS/MAPK pathway.\r\nThe Noonan Research Gene Panel has been developed in collaboration with an European consortia composed by Marco Tartaglia(1), Jose Luis Costa (2), Kornelia Neveling and Marcel Nelen (3) . 1) Istituto Superiore di Sanit\u00e0, Rome, Italy, 2) Ipatimup, Porto 3) Human Genetics, Radboud UMC Nijmegen .\r\nThe panel assesses 14 genes known to be related with this disorder. <i>A2ML1</i>, <i>BRAF</i>, <i>CBL</i>, <i>HRAS</i>, <i>KRAS</i>, <i>MAP2K1</i>, <i>MAP2K2</i>, <i>NRAS</i>, <i>PTPN11</i>, <i>RAF1</i>, <i>RIT1</i>, <i>SHOC2</i>, <i>SOS1</i>, <i>SPRED1</i>. In a first study of 60 archived samples we showed that very high sensitivity and specificity are achievable. For further details see ASHG 2014 poster \u201cDevelopment and verification of a Noonan genes Ion AmpliSeq\u2122 panel\u201d M. Nelen et al.\r\n</p>\r\n </td>\r\n </tr>\r\n <tr class=\"design-template-statistics\">\r\n <td><strong>Design Date</strong></td>\r\n <td colspan=\"2\" style=\"text-align: left\">\r\n <b>Publication:</b> ASHG 2014 Poster \"Development and verification of a Noonan genes Ion AmpliSeq\u2122 panel\"<br/>\r\n <b>Author:</b> Marcel Nelen (<a href='Marcel.Nelen@radboudumc.nl'>Marcel.Nelen@radboudumc.nl</a>)<br/>\r\n <b>Affiliation:</b> Dept. of Human Genetics, Radboud university medical center, Nijmegen, The Netherlands<br/>\r\n </td>\r\n </tr>\r\n <tr class=\"design-template-statistics\">\r\n <td>\r\n <strong>Recommended Application</strong>\r\n Germ line mutation detection\r\n </td>\r\n <td>\r\n <strong>Recommended Configuration</strong>\r\n Sample per Chip: 8 per 318 chip<br/>\r\n Minimum coverage: 684 \r\n </td>\r\n <td>\r\n <strong>Sample Type</strong>\r\n High molecular weight DNA\r\n </td>\r\n </tr>\r\n <tr class=\"design-template-statistics\">\r\n <td>\r\n <strong>Number of sample in Publication</strong>\r\n 60 samples \r\n </td>\r\n <td>\r\n <strong>Observed Performance</strong>\r\n Panel uniformity: 93.05%<br/>\r\n Reads on-targets: 98.42% \r\n </td>\r\n <td>\r\n <strong>Input DNA required </strong>\r\n 2 pool<br/>\r\n 20 ng total\r\n </td>\r\n </tr>\r\n <tr>\r\n <td colspan=\"3\">\r\n <b>Disease Research Area</b>: Developmental Disorders\r\n </td>\r\n </tr>\r\n</table>",
"results_uri": "/ws/tmpldesign/60011570/download/results",
"plan": {
"missed_bed": "WG_noonan.20150501.missed.bed",
"hotspot_bed": null,
"coverage_summary": "WG_noonan.20150501.results_coverage_summary.csv",
"designed_bed": "WG_noonan.20150501.designed.bed",
"target_mutations": null,
"primer_bed": null,
"runType": "AMPS",
"selectedPlugins": {},
"inputDna": "20 ng",
"coverage_detail": "WG_noonan.20150501.results_coverage_details.csv",
"primer_sequences": null,
"displayedPanelSize": "26.99 kb",
"submitted_bed": "WG_noonan.20150501.submitted.bed",
"well_plate_data": "WG_noonan.20150501.384WellPlateDataSheet.csv"
},
"design_id": "Noonan",
"pipeline": "DNA",
"request_id_and_solution_ordering_id": "Noonan",
"pipeline_version": null,
"created_date": "2015-05-22T20:52:38.703+0000",
"order_number": 0,
"amplicons_coverage_summary": 100
},
"pre_process_files": [
"WG_noonan.20150501.designed.bed",
"WG_noonan.20150501.missed.bed",
"WG_noonan.20150501.submitted.bed",
"WG_noonan.20150501.results_coverage_details.csv",
"WG_noonan.20150501.ampliconDataSheet.csv",
"WG_noonan.20150501.384WellPlateDataSheet.csv",
"WG_noonan.20150501.concentration.tab",
"WG_noonan.20150501.results_coverage_summary.csv",
"plan.json"
],
"num_bases": 47724
},
"upload_id": "1",
"file": "/results/uploads/BED/1/hg19/unmerged/plain/WG_noonan.20150501.designed.bed",
"path": "/hg19/unmerged/plain/WG_noonan.20150501.designed.bed",
"resource_uri": "/rundb/api/v1/content/1/",
"type": "target",
"id": 1,
"name": "WG_noonan.20150501.designed.bed"
}
]
}
Allowed list HTTP methods¶
- GET
- POST
- PUT
- DELETE
- PATCH
Allowed detail HTTP methods¶
- GET
- POST
- PUT
- DELETE
- PATCH