Libmetrics Resource¶

Resource URL: http://mytorrentserver/rundb/api/v1/libmetrics/

Schema URL: http://mytorrentserver/rundb/api/v1/libmetrics/schema/

Perform read-only operations on libmetrics resources and data elements.

Fields table¶

field	help text	default	nullable	readonly	blank	unique	type
i350Q17_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i150Q47_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i300Q47_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i600Q20_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i300Q20_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i250Q17_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
q10_longest_alignment	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i50Q10_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
aveKeyCounts	Floating point numeric data. Ex: 26.73	n/a	false	false	false	false	float
i50Q17_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
total_mapped_target_bases	Unicode string data. Ex: “Hello World”	n/a	false	false	false	false	string
i200Q7_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i100Q47_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i50Q20_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i450Q7_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
genomesize	Unicode string data. Ex: “Hello World”	n/a	false	false	false	false	string
i550Q20_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
report	A single related resource. Can be either a URI or set of nested resource data.	n/a	false	false	false	false	related
i450Q47_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
dr	Floating point numeric data. Ex: 26.73	n/a	false	false	false	false	float
i150Q17_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
q7_mapped_bases	Unicode string data. Ex: “Hello World”	n/a	false	false	false	false	string
i350Q7_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i500Q20_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
q20_mapped_bases	Unicode string data. Ex: “Hello World”	n/a	false	false	false	false	string
i250Q47_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
q47_longest_alignment	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i550Q17_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i50Q47_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i200Q17_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i250Q20_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
q47_alignments	Integer data. Ex: 2673	n/a	false	false	false	false	integer
align_sample	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i100Q10_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i350Q20_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i100Q7_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i400Q17_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i500Q47_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i450Q20_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
q7_mean_alignment_length	Integer data. Ex: 2673	n/a	false	false	false	false	integer
q7_alignments	Integer data. Ex: 2673	n/a	false	false	false	false	integer
total_mapped_reads	Unicode string data. Ex: “Hello World”	n/a	false	false	false	false	string
i600Q10_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i250Q10_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
cf	Floating point numeric data. Ex: 26.73	n/a	false	false	false	false	float
i500Q7_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
q10_mapped_bases	Unicode string data. Ex: “Hello World”	n/a	false	false	false	false	string
i550Q7_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
duplicate_reads	Integer data. Ex: 2673	n/a	true	false	false	false	integer
i350Q47_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
totalNumReads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
resource_uri	Unicode string data. Ex: “Hello World”	n/a	false	true	false	false	string
i350Q10_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i300Q10_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
q20_mean_alignment_length	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i250Q7_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i200Q10_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i400Q7_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i200Q47_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
q7_longest_alignment	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i500Q10_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
Genome_Version	Unicode string data. Ex: “Hello World”	n/a	false	false	false	false	string
i400Q20_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
q10_alignments	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i450Q17_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i100Q20_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i550Q10_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i450Q10_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i400Q47_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
q17_longest_alignment	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i150Q7_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i400Q10_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
q10_mean_alignment_length	Integer data. Ex: 2673	n/a	false	false	false	false	integer
raw_accuracy	Floating point numeric data. Ex: 26.73	n/a	false	false	false	false	float
sysSNR	Floating point numeric data. Ex: 26.73	n/a	false	false	false	false	float
q17_mapped_bases	Unicode string data. Ex: “Hello World”	n/a	false	false	false	false	string
Index_Version	Unicode string data. Ex: “Hello World”	n/a	false	false	false	false	string
i300Q17_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
q17_mean_alignment_length	Integer data. Ex: 2673	n/a	false	false	false	false	integer
ie	Floating point numeric data. Ex: 26.73	n/a	false	false	false	false	float
id	Integer data. Ex: 2673		false	false	true	true	integer
q20_alignments	Integer data. Ex: 2673	n/a	false	false	false	false	integer
q47_mapped_bases	Unicode string data. Ex: “Hello World”	n/a	false	false	false	false	string
genome	Unicode string data. Ex: “Hello World”	n/a	false	false	false	false	string
i300Q7_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i150Q20_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i550Q47_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i600Q47_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i100Q17_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
q47_mean_alignment_length	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i50Q7_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i600Q7_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i600Q17_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
q17_alignments	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i500Q17_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i150Q10_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer
q20_longest_alignment	Integer data. Ex: 2673	n/a	false	false	false	false	integer
i200Q20_reads	Integer data. Ex: 2673	n/a	false	false	false	false	integer

Example request¶

Request URL: http://mytorrentserver/rundb/api/v1/libmetrics/?format=json&limit=1

Python example¶

import requests

ts_api_request = requests.get("http://mytorrentserver/rundb/api/v1/libmetrics/", params={"format": "json", "limit": 1})
ts_api_response = ts_api_request.json()

libmetricss = ts_api_response["objects"]

for libmetrics in libmetricss:
    print libmetrics

Torrent Server response¶

{
    "meta": {
        "previous": null,
        "total_count": 49960,
        "offset": 0,
        "limit": 1,
        "next": "/rundb/api/v1/libmetrics/?offset=1&limit=1&format=json"
    },
    "objects": [
        {
            "i350Q17_reads": 0,
            "i150Q47_reads": 0,
            "i300Q47_reads": 0,
            "i600Q20_reads": 0,
            "i300Q20_reads": 0,
            "i250Q17_reads": 0,
            "q10_longest_alignment": 137,
            "i50Q10_reads": 5244,
            "aveKeyCounts": 82,
            "i50Q17_reads": 5050,
            "total_mapped_target_bases": "0",
            "i200Q7_reads": 0,
            "i100Q47_reads": 2641,
            "i50Q20_reads": 4738,
            "i450Q7_reads": 0,
            "genomesize": "4686137",
            "i550Q20_reads": 0,
            "report": "/rundb/api/v1/results/3/",
            "i450Q47_reads": 0,
            "dr": 0.310014492754,
            "i150Q17_reads": 0,
            "q7_mapped_bases": "552185",
            "i350Q7_reads": 0,
            "i500Q20_reads": 0,
            "q20_mapped_bases": "493269",
            "i250Q47_reads": 0,
            "q47_longest_alignment": 133,
            "i550Q17_reads": 0,
            "i50Q47_reads": 4527,
            "i200Q17_reads": 0,
            "i250Q20_reads": 0,
            "q47_alignments": 4942,
            "align_sample": 0,
            "i100Q10_reads": 3990,
            "i350Q20_reads": 0,
            "i100Q7_reads": 3991,
            "i400Q17_reads": 0,
            "i500Q47_reads": 0,
            "i450Q20_reads": 0,
            "q7_mean_alignment_length": 104,
            "q7_alignments": 5311,
            "total_mapped_reads": "0",
            "i600Q10_reads": 0,
            "i250Q10_reads": 0,
            "cf": 0.760992753623,
            "i500Q7_reads": 0,
            "q10_mapped_bases": "551679",
            "i550Q7_reads": 0,
            "duplicate_reads": null,
            "i350Q47_reads": 0,
            "totalNumReads": 5381,
            "resource_uri": "/rundb/api/v1/libmetrics/1/",
            "i350Q10_reads": 0,
            "i300Q10_reads": 0,
            "q20_mean_alignment_length": 98,
            "i250Q7_reads": 0,
            "i200Q10_reads": 0,
            "i400Q7_reads": 0,
            "i200Q47_reads": 0,
            "q7_longest_alignment": 137,
            "i500Q10_reads": 0,
            "Genome_Version": "1",
            "i400Q20_reads": 0,
            "q10_alignments": 5306,
            "i450Q17_reads": 0,
            "i100Q20_reads": 3443,
            "i550Q10_reads": 0,
            "i450Q10_reads": 0,
            "i400Q47_reads": 0,
            "q17_longest_alignment": 137,
            "i150Q7_reads": 0,
            "i400Q10_reads": 0,
            "q10_mean_alignment_length": 104,
            "raw_accuracy": 0,
            "sysSNR": 17.32,
            "q17_mapped_bases": "524626",
            "Index_Version": "tmap-f2",
            "i300Q17_reads": 0,
            "q17_mean_alignment_length": 102,
            "ie": 0.884253623188,
            "id": 1,
            "q20_alignments": 5030,
            "q47_mapped_bases": "457712",
            "genome": "E. coli DH10B",
            "i300Q7_reads": 0,
            "i150Q20_reads": 0,
            "i550Q47_reads": 0,
            "i600Q47_reads": 0,
            "i100Q17_reads": 3714,
            "q47_mean_alignment_length": 93,
            "i50Q7_reads": 5250,
            "i600Q7_reads": 0,
            "i600Q17_reads": 0,
            "q17_alignments": 5156,
            "i500Q17_reads": 0,
            "i150Q10_reads": 0,
            "q20_longest_alignment": 137,
            "i200Q20_reads": 0
        }
    ]
}

Allowed HTTP methods¶

get
post
put
delete
patch

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