Compositeexperiment Resource¶
Resource URL: http://mytorrentserver/rundb/api/v1/compositeexperiment/
Schema URL: http://mytorrentserver/rundb/api/v1/compositeexperiment/schema/
Fields table¶
| field | help text | default | nullable | readonly | blank | unique | type |
|---|---|---|---|---|---|---|---|
| ftpStatus | Unicode string data. Ex: “Hello World” | false | false | true | false | string | |
| storage_options | Unicode string data. Ex: “Hello World” | A | false | false | false | false | string |
| star | Boolean data. Ex: True | false | false | false | true | false | boolean |
| chipType | Unicode string data. Ex: “Hello World” | n/a | false | false | false | false | string |
| notes | Unicode string data. Ex: “Hello World” | n/a | true | false | false | false | string |
| results | Many related resources. Can be either a list of URIs or list of individually nested resource data. | n/a | false | false | false | false | related |
| resultDate | A date & time as a string. Ex: “2010-11-10T03:07:43” | true | true | false | false | false | datetime |
| flows | Integer data. Ex: 2673 | n/a | false | false | false | false | integer |
| repResult | A single related resource. Can be either a URI or set of nested resource data. | n/a | true | false | true | false | related |
| runMode | Unicode string data. Ex: “Hello World” | false | false | true | false | string | |
| expName | Unicode string data. Ex: “Hello World” | n/a | false | false | false | false | string |
| pgmName | Unicode string data. Ex: “Hello World” | n/a | false | false | false | false | string |
| date | A date & time as a string. Ex: “2010-11-10T03:07:43” | n/a | false | false | false | false | datetime |
| resource_uri | Unicode string data. Ex: “Hello World” | n/a | false | true | false | false | string |
| id | Integer data. Ex: 2673 | false | false | true | true | integer | |
| plan | A single related resource. Can be either a URI or set of nested resource data. | n/a | true | false | true | false | related |
Example request¶
Request URL: http://mytorrentserver/rundb/api/v1/compositeexperiment/?format=json&limit=1
Python example¶
import requests
ts_api_request = requests.get("http://mytorrentserver/rundb/api/v1/compositeexperiment/", params={"format": "json", "limit": 1})
ts_api_response = ts_api_request.json()
compositeexperiments = ts_api_response["objects"]
for compositeexperiment in compositeexperiments:
print compositeexperiment
Torrent Server response¶
{
"meta": {
"previous": null,
"total_count": 26763,
"offset": 0,
"limit": 1,
"next": "/rundb/api/v1/compositeexperiment/?offset=1&limit=1&format=json"
},
"objects": [
{
"chipInstrumentType": "proton",
"chipType": "P1.1.17",
"results": [
{
"status": "Completed",
"processedflows": 0,
"analysis_metrics": {
"ignored": 1416707,
"lib": 122792563,
"total_wells": 164699136,
"pinned": 345310,
"live": 122796187,
"excluded": 16095180,
"bead": 123099544,
"resource_uri": "",
"id": 54528,
"empty": 23742395,
"libFinal": 85173747
},
"timeStamp": "2015-02-03T02:21:07.000963+00:00",
"analysismetrics": {
"ignored": 1416707,
"lib": 122792563,
"total_wells": 164699136,
"pinned": 345310,
"live": 122796187,
"excluded": 16095180,
"bead": 123099544,
"resource_uri": "",
"id": 54528,
"empty": 23742395,
"libFinal": 85173747
},
"reportLink": "/output/Home/Auto_user_F3--909--R78811-mosaic1tru4_1xot2_na12878_1400Mmol_4chips-co_33084_317423/",
"id": 317423,
"reportStatus": "Nothing",
"quality_metrics": {
"q0_mean_read_length": 203.07748070541,
"q0_reads": 85173747,
"q0_bases": "17296869963",
"q20_reads": 85173747,
"q20_bases": "15168226464",
"q20_mean_read_length": 203,
"id": 50272,
"resource_uri": ""
},
"resultsName": "Auto_user_F3--909--R78811-mosaic1tru4_1xot2_na12878_1400Mmol_4chips-co_33084",
"projects": [
{
"resource_uri": "",
"id": 1622,
"name": "mosaic_enterprise",
"modified": "2015-02-02T18:26:29.000916+00:00"
}
],
"qualitymetrics": {
"q0_mean_read_length": 203.07748070541,
"q0_reads": 85173747,
"q0_bases": "17296869963",
"q20_reads": 85173747,
"q20_bases": "15168226464",
"q20_mean_read_length": 203,
"id": 50272,
"resource_uri": ""
},
"eas": {
"resource_uri": "",
"reference": "hg19",
"barcodeKitName": "IonXpress"
},
"resource_uri": "/rundb/api/v1/compositeresult/317423/",
"libmetrics": {
"i100Q20_reads": 63353502,
"aveKeyCounts": 84,
"id": 52457,
"resource_uri": "",
"q20_mean_alignment_length": 180
},
"autoExempt": false,
"representative": false
},
{
"status": "Completed",
"processedflows": 520,
"analysis_metrics": {
"ignored": 6676,
"lib": 754498,
"total_wells": 960000,
"pinned": 40056,
"live": 754506,
"excluded": 0,
"bead": 756432,
"resource_uri": "",
"id": 54510,
"empty": 156836,
"libFinal": 502627
},
"timeStamp": "2015-02-02T21:18:01.000809+00:00",
"analysismetrics": {
"ignored": 6676,
"lib": 754498,
"total_wells": 960000,
"pinned": 40056,
"live": 754506,
"excluded": 0,
"bead": 756432,
"resource_uri": "",
"id": 54510,
"empty": 156836,
"libFinal": 502627
},
"reportLink": "/output/Home/Auto_user_F3--909--R78811-mosaic1tru4_1xot2_na12878_1400Mmol_4chips-co_33084_tn_317424/",
"id": 317424,
"reportStatus": "Nothing",
"quality_metrics": {
"q0_mean_read_length": 202.425096542764,
"q0_reads": 502627,
"q0_bases": "101744319",
"q20_reads": 502627,
"q20_bases": "88430873",
"q20_mean_read_length": 202,
"id": 50259,
"resource_uri": ""
},
"resultsName": "Auto_user_F3--909--R78811-mosaic1tru4_1xot2_na12878_1400Mmol_4chips-co_33084_tn",
"projects": [
{
"resource_uri": "",
"id": 1622,
"name": "mosaic_enterprise",
"modified": "2015-02-02T18:26:29.000916+00:00"
}
],
"qualitymetrics": {
"q0_mean_read_length": 202.425096542764,
"q0_reads": 502627,
"q0_bases": "101744319",
"q20_reads": 502627,
"q20_bases": "88430873",
"q20_mean_read_length": 202,
"id": 50259,
"resource_uri": ""
},
"eas": {
"resource_uri": "",
"reference": "hg19",
"barcodeKitName": "IonXpress"
},
"resource_uri": "/rundb/api/v1/compositeresult/317424/",
"libmetrics": {
"i100Q20_reads": 364623,
"aveKeyCounts": 84,
"id": 52444,
"resource_uri": "",
"q20_mean_alignment_length": 177
},
"autoExempt": false,
"representative": false
}
],
"library": "hg19",
"sample": "609600",
"runMode": "single",
"storage_options": "D",
"repResult": "/rundb/api/v1/compositeresult/317424/",
"id": 33084,
"archived": false,
"barcodeId": "IonXpress",
"sampleSetName": "",
"star": false,
"resultDate": "2015-02-03T02:21:07.000963+00:00",
"flows": 520,
"plan": {
"runType": "WGNM",
"id": 111321,
"resource_uri": ""
},
"date": "2015-02-02T18:23:59+00:00",
"ftpStatus": "Complete",
"notes": "mosaic 1 ot 4 chips 1400M molecules",
"chipDescription": "PI",
"pgmName": "f3",
"keep": false,
"expName": "R_2015_02_02_13_18_20_user_F3--909--R78811-mosaic1tru4_1xot2_na12878_1400Mmol_4chips-co",
"resource_uri": "/rundb/api/v1/compositeexperiment/33084/"
}
]
}
Allowed HTTP methods¶
- get
- post
- put
- delete
- patch
