Referencegenome Resource

Resource URL: http://mytorrentserver/rundb/api/v1/referencegenome/

Schema URL: http://mytorrentserver/rundb/api/v1/referencegenome/schema/

Perform read-only operations on referencegenome resources and data elements.

Fields table

field	help text	default	nullable	readonly	blank	unique	type
status	Unicode string data. Ex: “Hello World”		false	false	true	false	string
reference_path	Unicode string data. Ex: “Hello World”		false	false	true	false	string
name	Unicode string data. Ex: “Hello World”	n/a	false	false	false	false	string
short_name	Unicode string data. Ex: “Hello World”	n/a	false	false	false	false	string
index_version	Unicode string data. Ex: “Hello World”		false	false	true	false	string
notes	Unicode string data. Ex: “Hello World”		false	false	true	false	string
enabled	Boolean data. Ex: True	true	false	false	true	false	boolean
species	Unicode string data. Ex: “Hello World”		false	false	true	false	string
identity_hash	Unicode string data. Ex: “Hello World”	None	true	false	false	false	string
source	Unicode string data. Ex: “Hello World”		false	false	true	false	string
version	Unicode string data. Ex: “Hello World”		false	false	true	false	string
celery_task_id	Unicode string data. Ex: “Hello World”		false	false	true	false	string
date	A date & time as a string. Ex: “2010-11-10T03:07:43”	2014-06-28T14:05:04.000158+00:00	false	false	false	false	datetime
verbose_error	Unicode string data. Ex: “Hello World”		false	false	true	false	string
id	Integer data. Ex: 2673		false	false	true	true	integer
resource_uri	Unicode string data. Ex: “Hello World”	n/a	false	true	false	false	string

Example request

Request URL: http://mytorrentserver/rundb/api/v1/referencegenome/?format=json&limit=1

Python example

import requests

ts_api_request = requests.get("http://mytorrentserver/rundb/api/v1/referencegenome/", params={"format": "json", "limit": 1})
ts_api_response = ts_api_request.json()

referencegenomes = ts_api_response["objects"]

for referencegenome in referencegenomes:
    print referencegenome

Torrent Server response

{
    "meta": {
        "previous": null,
        "total_count": 5,
        "offset": 0,
        "limit": 1,
        "next": "/rundb/api/v1/referencegenome/?offset=1&limit=1&format=json"
    },
    "objects": [
        {
            "status": "complete",
            "reference_path": "/results/referenceLibrary/tmap-f3/CFTR_38amp_v2",
            "name": "CFTR_38amp_v2",
            "short_name": "CFTR_38amp_v2",
            "index_version": "tmap-f3",
            "notes": "",
            "enabled": true,
            "species": "",
            "identity_hash": null,
            "source": "",
            "version": "CFTR_38amp_v2",
            "celery_task_id": "",
            "date": "2012-03-21T12:32:00.000382+00:00",
            "verbose_error": "[\"\", \"\\nSequence name 'CFTR.13.120s' contains a non-alphanumeric character at line 1 !\\n\\n/usr/local/bin/build_genome_index.pl: /results/referenceLibrary/tmap-f2/CFTR_38amp_v2/CFTR_38amp_v2.fasta is fixed and the original is kept as /results/referenceLibrary/tmap-f2/CFTR_38amp_v2/CFTR_38amp_v2.fasta.orig \\n\\n/usr/local/bin/build_genome_index.pl: output directory CFTR_38amp_v2 already exits, aborting.\\n\", 9]",
            "id": 7,
            "resource_uri": "/rundb/api/v1/referencegenome/7/"
        }
    ]
}

Allowed HTTP methods

• get
• post
• put
• delete
• patch