Database Table rundb_qualitymetrics¶
Postgres database: iondb
Postgres table: rundb_qualitymetrics
Quality metrics data model.
Lifecycle¶
Quality metrics are calculated during the alignment QC stage of the analysis pipeline.
Referenced by¶
Schema¶
| Field | Type | Description |
|---|---|---|
| id | Integer | ID |
| q0_100bp_reads | Integer | q0 100bp reads |
| q0_150bp_reads | Integer | q0 150bp reads |
| q0_50bp_reads | Integer | q0 50bp reads |
| q0_bases | Big (8 byte) integer | q0 bases |
| q0_max_read_length | Integer | q0 max read length |
| q0_mean_read_length | Floating point number | q0 mean read length |
| q0_reads | Integer | q0 reads |
| q17_100bp_reads | Integer | q17 100bp reads |
| q17_150bp_reads | Integer | q17 150bp reads |
| q17_50bp_reads | Integer | q17 50bp reads |
| q17_bases | Big (8 byte) integer | q17 bases |
| q17_max_read_length | Integer | q17 max read length |
| q17_mean_read_length | Floating point number | q17 mean read length |
| q17_reads | Integer | q17 reads |
| q20_100bp_reads | Integer | q20 100bp reads |
| q20_150bp_reads | Integer | q20 150bp reads |
| q20_50bp_reads | Integer | q20 50bp reads |
| q20_bases | Big (8 byte) integer | q20 bases |
| q20_max_read_length | Floating point number | q20 max read length |
| q20_mean_read_length | Integer | q20 mean read length |
| q20_reads | Integer | q20 reads |
| report | Results (ForeignKey) | the related rundb.Results row |
