Database Table rundb_experiment¶
Postgres database: iondb
Postgres table: rundb_experiment
Experiment description data model.
Lifecycle¶
Each sequencing run has a corresponding rundb_experiment table record. These database items are set by the Crawler process, which monitors directories containing PGM or Proton experiment data and creates a record for each new experiment it finds.
Referenced by¶
Schema¶
| Field | Type | Description |
|---|---|---|
| autoAnalyze | Boolean (Either True or False) | autoAnalyze |
| baselineRun | Boolean (Either True or False) | baselineRun |
| chipBarcode | String (up to 64) | chipBarcode |
| chipType | String (up to 32) | chipType |
| cycles | Integer | cycles |
| date | Date (with time) | date |
| diskusage | Integer | diskusage |
| displayName | String (up to 128) | displayName |
| expCompInfo | Text | expCompInfo |
| expDir | String (up to 512) | expDir |
| expName | String (up to 128) | expName |
| flows | Integer | flows |
| flowsInOrder | Text | flowsInOrder |
| ftpStatus | String (up to 512) | ftpStatus |
| id | Integer | ID |
| isReverseRun | Boolean (Either True or False) | isReverseRun |
| log | Text | log |
| metaData | Text | metaData |
| notes | String (up to 1024) | notes |
| pgmName | String (up to 64) | pgmName |
| pinnedRepResult | Boolean (Either True or False) | pinned representative result |
| plan | PlannedExperiment (ForeignKey) | the related rundb.PlannedExperiment row |
| rawdatastyle | String (up to 24) | rawdatastyle |
| reagentBarcode | String (up to 64) | reagentBarcode |
| repResult | Results (ForeignKey) | the related rundb.Results row |
| resultDate | Date (with time) | resultDate |
| reverse_primer | String (up to 128) | reverse primer |
| runMode | String (up to 64) | runMode |
| seqKitBarcode | String (up to 64) | seqKitBarcode |
| sequencekitbarcode | String (up to 512) | sequencekitbarcode |
| sequencekitname | String (up to 512) | sequencekitname |
| star | Boolean (Either True or False) | star |
| status | String (up to 512) | status |
| storageHost | String (up to 128) | storageHost |
| storage_options | String (up to 200) | storage options |
| unique | String (up to 512) | unique |
| usePreBeadfind | Boolean (Either True or False) | usePreBeadfind |
| user_ack | String (up to 24) | user ack |
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Database Table rundb_experimentanalysissettings